Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq39641 100 2e-16
seq13328 82.4 7e-11
>seq39641
Length=587
Score = 100 bits (110), Expect = 2e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| |||||||| ||| | || |||||| | |||||| | ||||| || | |||
Sbjct 187 ATGCAAATTTTTGTAAAAACTCTTACTGGTAAAACGATCACATTGGAAGTAGAAGCATCT 246
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| ||||||||| |||| |||||| ||||||||||| |||||||| || |||
Sbjct 247 GATACTATCGAGAATGTGAAAGCGAAAATCCAGGACAAAGAAGGAATTCCACCGGATCAA 306
Query 25119 CAGCG 25123
|||||
Sbjct 307 CAGCG 311
>seq13328
Length=1679
Score = 82.4 bits (90), Expect = 7e-11
Identities = 106/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||||||||| || || || ||||| ||||| | || || | || || || ||||||
Sbjct 47 ATGCAAATATTCGTGAAAACATTGACTGGTAAGACGATTACCCTTGAGGTAGAATCGTCT 106
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || ||| |||| || |||| ||| || || ||||| || |||||||| ||
Sbjct 107 GATACCATTGAGAATGTGAAGGCTAAAATTCA-GGATAAGGAAGGTATCCCACCTGATCA 165
Query 25118 ACAGCGGATTATTTTTGCCGGCAA 25141
|| || |||||||||| || ||
Sbjct 166 GCAACGACTTATTTTTGCAGGTAA 189
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433087853955680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |