Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq21486 131 1e-25 seq13328 102 7e-17 seq39641 91.5 1e-13 seq5858 87.8 2e-12 seq2700 87.8 2e-12 >seq21486 Length=1089 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| |||||||||||||| |||||||| | || | |||||||| | | Sbjct 376 ATGCAAATTTTCGTTAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTCG 317 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| ||| ||||| ||||||||||| |||||||| |||||| Sbjct 316 GATACCATCGAAAACGTTAAAGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCAA 257 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || |||||||| ||||| | |||||| || || | || || || || Sbjct 256 CAGCGATTGATCTTTGCCGGAAAACAACTGGAGGATGGTCGTACGCTGTCGGACTATAAT 197 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || ||||| || Sbjct 196 ATCCAGAAGGAATCGAC 180 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| || || || ||||| ||||||| ||||| ||| || | Sbjct 1039 ATGCAAATCTTTGTAAAAACGTTGACAGGCAAAACAATCACTCTAGAAGTTGAAGCCTCT 980 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || ||||||||||| || || ||||| || ||||| Sbjct 979 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCGCCAGATCAG 920 Query 22339 CAACGTCTTATATTTGCCGG 22358 || |||||||| || || || Sbjct 919 CAGCGTCTTATTTTCGCTGG 900 >seq13328 Length=1679 Score = 102 bits (112), Expect = 7e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||| || || ||||| || || ||||| ||| | || ||||| || ||| | Sbjct 44 AAGATGCAAATATTCGTGAAAACATTGACTGGTAAGACGATTACCCTTGAGGTAGAATCG 103 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | || |||||||| || ||||| ||||| ||||| ||| Sbjct 104 TCTGATACCATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAAGGTATCCCACCTGAT 163 Query 22336 CAACAACGTCTTATATTTGCCGGCAA 22361 || ||||| ||||| ||||| || || Sbjct 164 CAGCAACGACTTATTTTTGCAGGTAA 189 >seq39641 Length=587 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||| | || ||||||||| |||| | ||||| ||| | | Sbjct 187 ATGCAAATTTTTGTAAAAACTCTTACTGGTAAAACGATCACATTGGAAGTAGAAGCATCT 246 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || ||||| || || |||||||| |||||| Sbjct 247 GATACTATCGAGAATGTGAAAGCGAAAATCCAGGACAAAGAAGGAATTCCACCGGATCAA 306 Query 22339 CAACG 22343 || || Sbjct 307 CAGCG 311 >seq5858 Length=3261 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| || | || ||||| ||||| | ||||| ||||| | Sbjct 2824 ATGCAAATTTTTGTAAAAACGTTGAAGGGCAAAACAATCACTTTAGAAGTTGAAACTTCT 2883 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | || | | |||||||| || || || |||||| ||||| Sbjct 2884 GATACAATCGAAATTGTAAAGGACAGGATTCAAGAAAAAGAAGGAATTCCATTAGATCAG 2943 Query 22339 CAACGTCTTATATTTGCCGGCAAACA 22364 ||||||||||| |||| || ||||| Sbjct 2944 CAACGTCTTATTTTTGATGGTAAACA 2969 >seq2700 Length=5623 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || |||||||| ||||| ||| |||| ||||| || ||| || | Sbjct 686 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAGACGATCACACTTGAGGTCGAATCCTCG 627 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || ||||| ||||| || || || || || ||||| Sbjct 626 GATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCCAGATCAG 567 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || || | || ||||| || || Sbjct 566 CAGCGATTGATTTTTGCAGGTAA 544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419495390939680