Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq21486 131 1e-25
seq13328 102 7e-17
seq39641 91.5 1e-13
seq5858 87.8 2e-12
seq2700 87.8 2e-12
>seq21486
Length=1089
Score = 131 bits (144), Expect = 1e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| |||||||||||||| |||||||| | || | |||||||| | |
Sbjct 376 ATGCAAATTTTCGTTAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTCG 317
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || | | ||| ||| ||||| ||||||||||| |||||||| ||||||
Sbjct 316 GATACCATCGAAAACGTTAAAGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCAA 257
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || |||||||| ||||| | |||||| || || | || || || ||
Sbjct 256 CAGCGATTGATCTTTGCCGGAAAACAACTGGAGGATGGTCGTACGCTGTCGGACTATAAT 197
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || ||||| ||
Sbjct 196 ATCCAGAAGGAATCGAC 180
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| ||||| || || || ||||| ||||||| ||||| ||| || |
Sbjct 1039 ATGCAAATCTTTGTAAAAACGTTGACAGGCAAAACAATCACTCTAGAAGTTGAAGCCTCT 980
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | || || ||||||||||| || || ||||| || |||||
Sbjct 979 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCGCCAGATCAG 920
Query 22339 CAACGTCTTATATTTGCCGG 22358
|| |||||||| || || ||
Sbjct 919 CAGCGTCTTATTTTCGCTGG 900
>seq13328
Length=1679
Score = 102 bits (112), Expect = 7e-17
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
||||||||||| || || ||||| || || ||||| ||| | || ||||| || ||| |
Sbjct 44 AAGATGCAAATATTCGTGAAAACATTGACTGGTAAGACGATTACCCTTGAGGTAGAATCG 103
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| |||||| | || || | || |||||||| || ||||| ||||| ||||| |||
Sbjct 104 TCTGATACCATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAAGGTATCCCACCTGAT 163
Query 22336 CAACAACGTCTTATATTTGCCGGCAA 22361
|| ||||| ||||| ||||| || ||
Sbjct 164 CAGCAACGACTTATTTTTGCAGGTAA 189
>seq39641
Length=587
Score = 91.5 bits (100), Expect = 1e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||||||||| |||||| | || ||||||||| |||| | ||||| ||| | |
Sbjct 187 ATGCAAATTTTTGTAAAAACTCTTACTGGTAAAACGATCACATTGGAAGTAGAAGCATCT 246
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| ||||| || ||||| || || |||||||| ||||||
Sbjct 247 GATACTATCGAGAATGTGAAAGCGAAAATCCAGGACAAAGAAGGAATTCCACCGGATCAA 306
Query 22339 CAACG 22343
|| ||
Sbjct 307 CAGCG 311
>seq5858
Length=3261
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||||||||| ||||| || | || ||||| ||||| | ||||| ||||| |
Sbjct 2824 ATGCAAATTTTTGTAAAAACGTTGAAGGGCAAAACAATCACTTTAGAAGTTGAAACTTCT 2883
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || | | || | | |||||||| || || || |||||| |||||
Sbjct 2884 GATACAATCGAAATTGTAAAGGACAGGATTCAAGAAAAAGAAGGAATTCCATTAGATCAG 2943
Query 22339 CAACGTCTTATATTTGCCGGCAAACA 22364
||||||||||| |||| || |||||
Sbjct 2944 CAACGTCTTATTTTTGATGGTAAACA 2969
>seq2700
Length=5623
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| || || |||||||| ||||| ||| |||| ||||| || ||| || |
Sbjct 686 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAGACGATCACACTTGAGGTCGAATCCTCG 627
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| || ||||| ||||| || || || || || |||||
Sbjct 626 GATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCCAGATCAG 567
Query 22339 CAACGTCTTATATTTGCCGGCAA 22361
|| || | || ||||| || ||
Sbjct 566 CAGCGATTGATTTTTGCAGGTAA 544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419495390939680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |