Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq21486 159 6e-34
seq39641 95.1 2e-14
seq9851 84.2 4e-11
>seq21486
Length=1089
Score = 159 bits (176), Expect = 6e-34
Identities = 175/233 (75%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 68230 AATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAAT 68289
||| ||| |||||||| || | |||| ||| ||||| || || || ||||| ||||| |
Sbjct 145 AATATCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGT 204
Query 68290 CGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG 68349
| || || || | ||||| || | || || ||||| || || | || ||||| || |
Sbjct 205 CCGACAGCGTACGACCATCCTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTG 264
Query 68350 GTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATT 68409
|||||||||| |||||||| ||||||||||| || ||| |||||||| || | | |
Sbjct 265 GTGGAATGCCCTCCTTGTCCTGAATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCT 324
Query 68410 CTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
| |||||||| || |||||||| ||||| | || || ||||| || ||||||
Sbjct 325 CCACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTAACGAAAATTTGCATT 377
Score = 84.2 bits (92), Expect = 4e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||||| || | || || || ||||||||||||||||| |||
Sbjct 725 CCACCACGAAGCCGGAGTACCAAATGCAAAGTCGATTCCTTTTGGATGTTATAATCAGAG 784
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCC 68323
||||| | ||||||||||||||||| ||
Sbjct 785 AGTGTTCGTCCATCTTCTAACTGCTTACC 813
>seq39641
Length=587
Score = 95.1 bits (104), Expect = 2e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| ||||| || | || ||||| || |||||||| ||||| ||||| || || || ||
Sbjct 326 CCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 267
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || |||||| || || | || |||||||||||| ||||| ||||| || || ||
Sbjct 266 TTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAAGA 207
Query 68442 GTCTTGACGAATATCTGCAT 68461
|| || || || || |||||
Sbjct 206 GTTTTTACAAAAATTTGCAT 187
>seq9851
Length=2160
Score = 84.2 bits (92), Expect = 4e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||||| || | || || || ||||||||||||||||| |||
Sbjct 770 CCACCACGAAGTCGGAGTACCAAATGCAAAGTCGATTCCTTTTGGATGTTATAATCAGAG 829
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCC 68323
||||| | ||||||||||||||||| ||
Sbjct 830 AGTGTTCGTCCATCTTCTAACTGCTTACC 858
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921098549827840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |