Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq21486 159 6e-34 seq39641 95.1 2e-14 seq9851 84.2 4e-11 >seq21486 Length=1089 Score = 159 bits (176), Expect = 6e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 68230 AATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAAT 68289 ||| ||| |||||||| || | |||| ||| ||||| || || || ||||| ||||| | Sbjct 145 AATATCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGT 204 Query 68290 CGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG 68349 | || || || | ||||| || | || || ||||| || || | || ||||| || | Sbjct 205 CCGACAGCGTACGACCATCCTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTG 264 Query 68350 GTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATT 68409 |||||||||| |||||||| ||||||||||| || ||| |||||||| || | | | Sbjct 265 GTGGAATGCCCTCCTTGTCCTGAATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCT 324 Query 68410 CTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | |||||||| || |||||||| ||||| | || || ||||| || |||||| Sbjct 325 CCACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTAACGAAAATTTGCATT 377 Score = 84.2 bits (92), Expect = 4e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||| || | || || || ||||||||||||||||| ||| Sbjct 725 CCACCACGAAGCCGGAGTACCAAATGCAAAGTCGATTCCTTTTGGATGTTATAATCAGAG 784 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCC 68323 ||||| | ||||||||||||||||| || Sbjct 785 AGTGTTCGTCCATCTTCTAACTGCTTACC 813 >seq39641 Length=587 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || | || ||||| || |||||||| ||||| ||||| || || || || Sbjct 326 CCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 267 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || |||||| || || | || |||||||||||| ||||| ||||| || || || Sbjct 266 TTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAAGA 207 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || || || || ||||| Sbjct 206 GTTTTTACAAAAATTTGCAT 187 >seq9851 Length=2160 Score = 84.2 bits (92), Expect = 4e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||| || | || || || ||||||||||||||||| ||| Sbjct 770 CCACCACGAAGTCGGAGTACCAAATGCAAAGTCGATTCCTTTTGGATGTTATAATCAGAG 829 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCC 68323 ||||| | ||||||||||||||||| || Sbjct 830 AGTGTTCGTCCATCTTCTAACTGCTTACC 858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921098549827840