Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2700 87.8 2e-12 seq39641 86.0 5e-12 seq21486 86.0 5e-12 >seq2700 Length=5623 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 ||||| || | || | ||||| || || ||||| |||||||||||||| |||||| Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 ||||| | ||||| || || | ||||||||| || | || | ||| || || || Sbjct 604 GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGTT 663 Query 114360 AGAGTTTTTACAAAAATCTGCATGGCTTAAT 114390 | ||| ||||| ||||| ||||| | ||||| Sbjct 664 AAAGTCTTTACGAAAATTTGCATAGTTTAAT 694 >seq39641 Length=587 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 |||||||| |||| | |||||||| ||||| ||||| ||||||||||| || || Sbjct 328 TACCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCG 269 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 ||| | | || | || || | | ||| || |||| || | |||||| || || | Sbjct 268 CTTTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAA 209 Query 114361 GAGTTTTTACAAAAATCTGCAT 114382 |||||||||||||||| ||||| Sbjct 208 GAGTTTTTACAAAAATTTGCAT 187 >seq21486 Length=1089 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 |||||||| | || |||||||| || || || ||||| ||||||||||| |||||| Sbjct 898 TACCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCTTGG 957 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 |||| | ||| | || || | || ||| || || | || | |||||||| |||| Sbjct 958 CCTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCA 1017 Query 114361 GAGTTTTTACAAAAATCTGCAT 114382 ||||||||||| || ||||| Sbjct 1018 ACGTTTTTACAAAGATTTGCAT 1039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419901565716864