Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq21486 131 4e-25
seq39641 113 1e-19
seq9851 100 7e-16
seq2700 93.3 1e-13
>seq21486
Length=1089
Score = 131 bits (144), Expect = 4e-25
Identities = 168/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302
|| ||| ||||| || | ||| || || |||| ||| ||| || ||||||||||||||
Sbjct 146 ATATCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTC 205
Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362
| ||||| || || || || | ||||||||| || ||||||| |||||||||
Sbjct 206 CGACAGCGTACGACCATCCTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGG 265
Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422
||| || || || || ||||| || || ||||| |||||||| || | ||| | ||
Sbjct 266 TGGAATGCCCTCCTTGTCCTGAATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTC 325
Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
||||| | ||| || || || || || | ||| || ||||| || ||||||
Sbjct 326 CACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTAACGAAAATTTGCATT 377
Score = 104 bits (114), Expect = 6e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
||||| || || |||||||| ||| | ||||| || ||||||||||| ||||| |||
Sbjct 584 CCTGCAAAAATAAGACGCTGCTGATCAGGAGGGATGCCCTCTTTATCCTGAATTTTGGCT 643
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| || || || | ||| | ||||||||| ||||| || || || || || ||
Sbjct 644 TTCACATTCTCGATCGTATCCGAAGCTTCTACTTCCAGCGTTATGGTTTTGCCAGTAAGC 703
Query 288454 GTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||||||
Sbjct 704 GTCTTTACGAAAATCTGCAT 723
>seq39641
Length=587
Score = 113 bits (124), Expect = 1e-19
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| |||||||||| ||||||||| ||| ||||||||||| |||||||||||||||
Sbjct 326 CCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 267
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| || || |||| ||| | ||||||||| | |||||||| || || || |||
Sbjct 266 TTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAAGA 207
Query 288454 GTCTTGACGAATATCTGCAT 288473
|| || || || || |||||
Sbjct 206 GTTTTTACAAAAATTTGCAT 187
>seq9851
Length=2160
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| |||||||||| ||||||||| ||| ||||| ||||| ||||||||||||||
Sbjct 1333 CCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCGCC 1392
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
|| || || || || | ||| | ||||||||||| |||||||| || || || |||
Sbjct 1393 TTAACATTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAAGA 1452
Query 288454 GTCTTGACGAATATCTGCAT 288473
|| || || || || |||||
Sbjct 1453 GTTTTTACAAAGATTTGCAT 1472
>seq2700
Length=5623
Score = 93.3 bits (102), Expect = 1e-13
Identities = 109/146 (75%), Gaps = 6/146 (4%)
Strand=Plus/Plus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387
|| ||||| || |||| ||||| ||| ||||| || |||||||| ||||| ||
Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGA---TCTGGAGGTATGCCTTCTTTGTCCTGAATC 600
Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447
|||||||| || ||||| || | ||| ||||| || || || ||||||||||| ||
Sbjct 601 TTCGCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCA 660
Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473
|| | |||||| ||||| || |||||
Sbjct 661 GTTAAAGTCTTTACGAAAATTTGCAT 686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178967121550016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |