Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq21486 109 5e-19
seq5858 96.9 3e-15
>seq21486
Length=1089
Score = 109 bits (120), Expect = 5e-19
Identities = 104/133 (78%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 64311 AAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAA 64370
|||| || |||||||| || || |||||||||||||| ||||| || || |||||||
Sbjct 907 AAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTTACAT 966
Query 64371 CCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTA 64430
|| | ||||||| ||| || ||||||| ||| | || ||||| ||||| |||||||
Sbjct 967 TTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCAACGTTTTTA 1026
Query 64431 CGAAAATTTGCAT 64443
| || ||||||||
Sbjct 1027 CAAAGATTTGCAT 1039
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|||||||| | | ||| || || |||| ||||||||| || || || || || || |
Sbjct 150 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGAC 209
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | || || || || || |||||| | || | ||||| || || || |||
Sbjct 210 AGCGTACGACCATCCTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGA 269
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || || || || ||| |||||| | || | ||||| || |||||
Sbjct 270 ATGCCCTCCTTGTCCTGAATCTTT-GCTTTAACGTTTTCGATGGTATCCGAAGCCTCCAC 328
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||| | |||| ||| || || || |||||||| |||||||||||||||
Sbjct 329 TTCCAACGTTATGGTTTTACCCGTTAAAGTTTTAACGAAAATTTGCATT 377
>seq5858
Length=3261
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 64308 CATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTA 64367
|| |||| || || ||||| || |||||||||||||||||||| || | | |||||
Sbjct 2959 CAAAAATAAGACGTTGCTGATCTAATGGAATTCCTTCTTTTTCTTGAATCCTGTCCTTTA 2900
Query 64368 CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTT 64427
||| || | ||||||| | || ||||||| ||| | || ||||| |||| ||||
Sbjct 2899 CAATTTCGATTGTATCAGAAGTTTCAACTTCTAAAGTGATTGTTTTGCCCTTCAACGTTT 2840
Query 64428 TTACGAAAATTTGCAT 64443
|||| |||||||||||
Sbjct 2839 TTACAAAAATTTGCAT 2824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499360801895680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |