Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq39641 111 1e-19 seq9851 93.3 3e-14 seq21486 89.7 4e-13 seq5858 87.8 1e-12 >seq39641 Length=587 Score = 111 bits (122), Expect = 1e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 |||||| | ||||| |||||||| || |||||||||||| ||||| ||||| | Sbjct 326 CCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 267 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| | || |||||||| |||||| || || || || |||||||| || ||| Sbjct 266 TTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAAGA 207 Query 15157 GTTTTTACAAAAATTTGCATA 15177 ||||||||||||||||||||| Sbjct 206 GTTTTTACAAAAATTTGCATA 186 >seq9851 Length=2160 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 |||||| | ||||| |||||||| || ||||||||| || ||||| ||||| Sbjct 1333 CCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCGCC 1392 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| | || || ||||| |||||| || || || || |||||||| || ||| Sbjct 1393 TTAACATTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAAGA 1452 Query 15157 GTTTTTACAAAAATTTGCATA 15177 ||||||||||| ||||||||| Sbjct 1453 GTTTTTACAAAGATTTGCATA 1473 >seq21486 Length=1089 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 || || | |||||| || || | ||||| |||||||| || |||||| || |||||| Sbjct 222 TCCTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTG 281 Query 15082 TCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAAT 15140 || ||| |||||||| || |||| || ||||| | || || || || || || Sbjct 282 TCCTGAATCTTTGCTTTA-ACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTAT 340 Query 15141 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||||| || | |||||| || ||||||||||| Sbjct 341 GGTTTTACCCGTTAAAGTTTTAACGAAAATTTGCAT 376 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 |||||| | || | |||||| || || ||||||||||| ||||| ||| ||| Sbjct 900 CCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCTTGGCC 959 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| |||| || ||||| ||| || |||| || || ||||| ||||||| Sbjct 960 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCAAC 1019 Query 15157 GTTTTTACAAAAATTTGCATA 15177 ||||||||||| ||||||||| Sbjct 1020 GTTTTTACAAAGATTTGCATA 1040 >seq5858 Length=3261 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 ||||| ||| | | || | ||| || || || |||||||||||| || || ||| Sbjct 2969 TGTTTACCATCAAAAATAAGACGTTGCTGATCTAATGGAATTCCTTCTTTTTCTTGAATC 2910 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 || ||||||||||| || ||||| | |||| || ||||| || || ||||| || Sbjct 2909 CTGTCCTTTACAATTTCGATTGTATCAGAAGTTTCAACTTCTAAAGTGATTGTTTTGCCC 2850 Query 15151 GTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| |||||||||||||||||||| Sbjct 2849 TTCAACGTTTTTACAAAAATTTGCAT 2824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357193936927520