Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq39641 111 1e-19
seq9851 93.3 3e-14
seq21486 89.7 4e-13
seq5858 87.8 1e-12
>seq39641
Length=587
Score = 111 bits (122), Expect = 1e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
|||||| | ||||| |||||||| || |||||||||||| ||||| ||||| |
Sbjct 326 CCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 267
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|| ||| | || |||||||| |||||| || || || || |||||||| || |||
Sbjct 266 TTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAAGA 207
Query 15157 GTTTTTACAAAAATTTGCATA 15177
|||||||||||||||||||||
Sbjct 206 GTTTTTACAAAAATTTGCATA 186
>seq9851
Length=2160
Score = 93.3 bits (102), Expect = 3e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
|||||| | ||||| |||||||| || ||||||||| || ||||| |||||
Sbjct 1333 CCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCGCC 1392
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|| ||| | || || ||||| |||||| || || || || |||||||| || |||
Sbjct 1393 TTAACATTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAAGA 1452
Query 15157 GTTTTTACAAAAATTTGCATA 15177
||||||||||| |||||||||
Sbjct 1453 GTTTTTACAAAGATTTGCATA 1473
>seq21486
Length=1089
Score = 89.7 bits (98), Expect = 4e-13
Identities = 115/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081
|| || | |||||| || || | ||||| |||||||| || |||||| || ||||||
Sbjct 222 TCCTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTG 281
Query 15082 TCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAAT 15140
|| ||| |||||||| || |||| || ||||| | || || || || || ||
Sbjct 282 TCCTGAATCTTTGCTTTA-ACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTAT 340
Query 15141 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||||||||| || | |||||| || |||||||||||
Sbjct 341 GGTTTTACCCGTTAAAGTTTTAACGAAAATTTGCAT 376
Score = 87.8 bits (96), Expect = 1e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
|||||| | || | |||||| || || ||||||||||| ||||| ||| |||
Sbjct 900 CCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCTTGGCC 959
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| |||| || ||||| ||| || |||| || || ||||| |||||||
Sbjct 960 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCAAC 1019
Query 15157 GTTTTTACAAAAATTTGCATA 15177
||||||||||| |||||||||
Sbjct 1020 GTTTTTACAAAGATTTGCATA 1040
>seq5858
Length=3261
Score = 87.8 bits (96), Expect = 1e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090
||||| ||| | | || | ||| || || || |||||||||||| || || |||
Sbjct 2969 TGTTTACCATCAAAAATAAGACGTTGCTGATCTAATGGAATTCCTTCTTTTTCTTGAATC 2910
Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150
|| ||||||||||| || ||||| | |||| || ||||| || || ||||| ||
Sbjct 2909 CTGTCCTTTACAATTTCGATTGTATCAGAAGTTTCAACTTCTAAAGTGATTGTTTTGCCC 2850
Query 15151 GTCAGAGTTTTTACAAAAATTTGCAT 15176
||| ||||||||||||||||||||
Sbjct 2849 TTCAACGTTTTTACAAAAATTTGCAT 2824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357193936927520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |