Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq21486 125 7e-24
seq9851 104 2e-17
seq39641 89.7 5e-13
>seq21486
Length=1089
Score = 125 bits (138), Expect = 7e-24
Identities = 168/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
||| ||||| | || | |||| || | ||| || || || || ||||| || ||
Sbjct 149 TCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGA 208
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
|| ||| ||| ||| || || |||||||| || ||||||||||||| ||||| || ||
Sbjct 209 CAGCGTACGACCATCCTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGG 268
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCG 127063
||||||||||||||| ||| | | ||||| | ||| ||||| ||| |||| | |||
Sbjct 269 AATGCCCTCCTTGTCC-TGAATCTTTGCTTTAACGTT-TTCGATGGTATCCGAAGCCTCC 326
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||||| | || | ||||| || || | |||||| || ||||| |||||
Sbjct 327 ACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTAACGAAAATTTGCAT 376
>seq9851
Length=2160
Score = 104 bits (114), Expect = 2e-17
Identities = 109/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033
|||||| ||||||||||||| ||||| || || || ||||| |||||| ||||||| |
Sbjct 1333 CCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCGCC 1392
Query 127034 TTGAGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092
|| | | |||| ||| || | | || || ||||||| || | |||||| || || ||
Sbjct 1393 TTAACATTCTCGATGGTATCAGATGCT-TCTACTTCGAATGTGATCGTTTTACCAGTAAG 1451
Query 127093 AGTTTTTACAAAAATCTGCAT 127113
|||||||||||| || |||||
Sbjct 1452 AGTTTTTACAAAGATTTGCAT 1472
>seq39641
Length=587
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033
|||||| ||||||||||||| ||||| || || || || || |||||| |||||||
Sbjct 326 CCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 267
Query 127034 TTGAGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092
|| | | |||| || || | | || || ||||| | || | |||||| || || ||
Sbjct 266 TTCACATTCTCGATAGTATCAGATGCT-TCTACTTCCAATGTGATCGTTTTACCAGTAAG 208
Query 127093 AGTTTTTACAAAAATCTGCAT 127113
||||||||||||||| |||||
Sbjct 207 AGTTTTTACAAAAATTTGCAT 187
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475230525345280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |