Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq21486 125 7e-24 seq9851 104 2e-17 seq39641 89.7 5e-13 >seq21486 Length=1089 Score = 125 bits (138), Expect = 7e-24 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| ||||| | || | |||| || | ||| || || || || ||||| || || Sbjct 149 TCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGA 208 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||| ||| ||| || || |||||||| || ||||||||||||| ||||| || || Sbjct 209 CAGCGTACGACCATCCTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGG 268 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCG 127063 ||||||||||||||| ||| | | ||||| | ||| ||||| ||| |||| | ||| Sbjct 269 AATGCCCTCCTTGTCC-TGAATCTTTGCTTTAACGTT-TTCGATGGTATCCGAAGCCTCC 326 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| | || | ||||| || || | |||||| || ||||| ||||| Sbjct 327 ACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTAACGAAAATTTGCAT 376 >seq9851 Length=2160 Score = 104 bits (114), Expect = 2e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| ||||||||||||| ||||| || || || ||||| |||||| ||||||| | Sbjct 1333 CCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCGCC 1392 Query 127034 TTGAGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 || | | |||| ||| || | | || || ||||||| || | |||||| || || || Sbjct 1393 TTAACATTCTCGATGGTATCAGATGCT-TCTACTTCGAATGTGATCGTTTTACCAGTAAG 1451 Query 127093 AGTTTTTACAAAAATCTGCAT 127113 |||||||||||| || ||||| Sbjct 1452 AGTTTTTACAAAGATTTGCAT 1472 >seq39641 Length=587 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| ||||||||||||| ||||| || || || || || |||||| ||||||| Sbjct 326 CCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 267 Query 127034 TTGAGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 || | | |||| || || | | || || ||||| | || | |||||| || || || Sbjct 266 TTCACATTCTCGATAGTATCAGATGCT-TCTACTTCCAATGTGATCGTTTTACCAGTAAG 208 Query 127093 AGTTTTTACAAAAATCTGCAT 127113 ||||||||||||||| ||||| Sbjct 207 AGTTTTTACAAAAATTTGCAT 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475230525345280