Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq21486 125 6e-24 seq2700 87.8 2e-12 seq39641 86.0 6e-12 >seq21486 Length=1089 Score = 125 bits (138), Expect = 6e-24 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| ||||| || | | || || || ||||| |||||||| ||||||||||| || Sbjct 149 TCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCC-- 206 Query 45173 GACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 ||| | | || ||| |||| ||||||||| || | |||||||| || || || || Sbjct 207 GACAGCGTACGACCATCCTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGT 266 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || ||||| ||| ||| | ||| | ||| || |||| ||| Sbjct 267 GGAATGCCCTCCTTGTCCTGAATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCC 326 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | ||||| || |||| |||||| || ||||||||||| Sbjct 327 ACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTAACGAAAATTTGCAT 376 >seq2700 Length=5623 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | |||||||| ||||| || || || ||||||||||| || ||||| || Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | ||| | || || || || ||||| || || || | ||| || || ||| Sbjct 604 GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGTT 663 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||| ||||| ||||||||||| Sbjct 664 AAAGTCTTTACGAAAATTTGCAT 686 >seq39641 Length=587 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | |||||||| || || ||||| ||||| |||||||| || || ||||| | Sbjct 326 CCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 267 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | || | || || || | || ||||| | || | |||||| || || ||| Sbjct 266 TTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAAGA 207 Query 45321 GTTTTTACAAAAATTTGCAT 45340 |||||||||||||||||||| Sbjct 206 GTTTTTACAAAAATTTGCAT 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451746281381120