Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq4886 165 3e-35 seq3 163 1e-34 seq21486 118 4e-21 seq13328 114 5e-20 seq4328 91.5 6e-13 seq39641 86.0 2e-11 >seq4886 Length=3728 Score = 165 bits (182), Expect = 3e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 ||||| || |||||||||||||||||| | |||||||| |||||||||||||| || Sbjct 2416 AAAACCTTCGCTCCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAATTGCG 2357 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 ||| |||| |||| ||| | ||||||| | || || || ||||| || ||| Sbjct 2356 GAAGCATATCTTGGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTTTAAT 2297 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGA 451411 ||||||||||| ||||| |||||||||||||| |||||| || | |||||| | || Sbjct 2296 GATGCACAACGCCAAGCCACTAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTCCGT 2237 Query 451412 ATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 || || |||||||| ||||| || ||| | || ||||| || Sbjct 2236 ATCATCAATGAACCAACAGCTGCCGCTATTGCTTATGGGCT 2196 Score = 100 bits (110), Expect = 1e-15 Identities = 166/238 (70%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 ||||| ||||||||||| ||||||||||| ||||| ||||| | | || | ||| Sbjct 1163 AATCCAGATGAAGCTGTAGCATATGGTGCAGCAGTCCAAGCTGGTGTTAT------TTCG 1110 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 | ||| |||| || || || | ||| ||||||| | ||| | ||||||| || Sbjct 1109 GGTGAAGAAAGCACTGGTGACATAGTATTATTAGATGTGAATCCTTTGACTCTTGGTATT 1050 Query 452111 GAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGA--ACTTCTATTCCTTGTA 452168 ||||||| |||||| | ||||| || | ||| || |||| ||| ||| ||| | Sbjct 1049 GAAACAGTTGGTGGTGTTATGACCAAACTTATTCAA--AGGAACACTGTTATCCCTACCA 992 Query 452169 AAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGT 452226 | || ||||||| ||| ||| ||| |||||| || ||| || || ||||| || Sbjct 991 AGAAAAGTCAAATCTTTTCTACGGCAGCTGATAATCAGCCAACAGTTACCATTCAGGT 934 >seq3 Length=46552 Score = 163 bits (180), Expect = 1e-34 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 || || || || || ||||| || |||| |||||||||||||| |||||| | |||| Sbjct 27796 TACAAGGGCGAGACGAAAACCTTCACTCCAGAAGAAATTTCATCAATGGTTTTGGTTAAA 27855 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||| ||||| || ||| || | ||||| | | || | ||||| || || || || Sbjct 27856 ATGAAGGAAACTGCTGAAGCATTTCTTGGTCATGCGGTCAAGGATGCCGTCATCACAGTC 27915 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 || || ||||||||||| |||| || |||||||| |||||| | || ||||||||| Sbjct 27916 CCTGCGTATTTCAATGACTCACAGCGACAAGCAACGAAAGATTCCGGTGCAATTGCTGGT 27975 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 | ||||| | |||||||| |||||||| |||||||| ||| | || ||||| Sbjct 27976 CTGAATGTCTTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGG 28028 Score = 132 bits (146), Expect = 2e-25 Identities = 194/272 (71%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 452220 TTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTA 452279 |||| || | ||||| |||||||| |||||| |||| || || | || |||| Sbjct 24259 TTCAGGTTTACGAAGGTGAACGTGCGATGACAAGAGACAACAACCTGTTGGGCAAATTCG 24318 Query 452280 CTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATG 452339 ||||| ||||| ||| || | || || ||||| ||| | || | |||| Sbjct 24319 AACTTTCTGGAATTCCGCCTGCTCCTCGTGGTGTGCCACAAATCGAAGTCACTTTTGATA 24378 Query 452340 TTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAA 452399 | |||||||| |||||||| ||||| |||| || ||||| |||| || || || Sbjct 24379 TCGATGCAAACGGTATTCTAAATGTCTCTGCACAGGATAAATCCACTGGCAAG-CACAAT 24437 Query 452400 AA-ATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTA 452458 || ||||||||||| ||||||||| ||||| || || || || || |||| |||||| Sbjct 24438 AAGATTACAATTACCAATGATAAAGGACGTTTGTCGAAGGATGAAATCGAAAGAATGGTT 24497 Query 452459 GATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 || ||||| ||||| | ||||| ||||||||| Sbjct 24498 GAGGAAGCCGAAAAGTACAAGGCTGATGATGA 24529 Score = 122 bits (134), Expect = 3e-22 Identities = 227/328 (69%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 452231 GAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAAC 452290 ||||| |||||||| ||||| ||| |||||| || || |||| | || Sbjct 29366 GAAGGTGAACGTGCTATGACGAAAGACAATAATCTGCTTGGTAAATTCGAGTTGTCTGGA 29425 Query 452291 ATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAAT 452350 ||||| ||| || | || || ||||||||| |||| | |||| |||| || || Sbjct 29426 ATTCCACCTGCTCCTCGTGGTGTGCCGCAAATTGAAGTTACTTTTGATATTGACGCGAAC 29485 Query 452351 GGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAA-ATTACAAT 452409 || ||| | ||||| ||| || |||||| | |||||| ||||| || ||||| || Sbjct 29486 GGAATTTTGAATGTTTCCGCACAAGATAAATCAACAGGAAAA-CAGAACAAGATTACGAT 29544 Query 452410 TACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGA 452469 ||| || |||||| ||||| || || || || |||||| |||||| | ||||| || Sbjct 29545 TACCAACGATAAAGGACGTTTGTCAAAGGATGAGATTGAACGGATGGTACAGGAAGCTGA 29604 Query 452470 AAAATTCAAGGATGATGATGAACAAGTTAGAAAACATGTTGAAGCTAAAAACAAACTAGA 452529 |||| ||||| ||||||||| | | | | | | ||| ||||||||| || || Sbjct 29605 GAAATACAAGGCAGATGATGAAGCACAGAAAGATCGTATTGCAGCTAAAAATGCTCTGGA 29664 Query 452530 AGGATATTGTTATCAA-ATGAAACAAAC 452556 | |||| | |||| ||||||||||| Sbjct 29665 ATCATATGCAT-TCAATATGAAACAAAC 29691 Score = 91.5 bits (100), Expect = 6e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 |||||||| | |||||||||||||| ||||| || | || |||||||| |||||||||| Sbjct 22235 TTCAAGTAGAGTATAAAGGTGAAACAAAAACATTCACACCAGAAGAAATATCATCTATGG 22294 Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGG 451305 || | |||||||| |||||||| ||| || | |||| Sbjct 22295 TTTTGGGAAAAATGAAGGAAACAGCTGAAGCATTTCTTGG 22334 Score = 87.8 bits (96), Expect = 7e-12 Identities = 156/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 452003 GCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGT--TCAGATGATGAAA 452060 ||||| ||||||||||||||||| |||||||||||||| | ||| | || | ||| Sbjct 29040 GCTGTGGCATATGGTGCTGCAGTGCAAGCAGCTATTCTTTCTGGTGATAAGTCG--GAAG 29097 Query 452061 AATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTG 452120 || ||| | ||||| | || || |||| || || ||||| |||||||||| | Sbjct 29098 CCGTACAAGACTTGTTGTTACTCGACGTCGCACCGCTTTCACTTGGTATTGAAACAGCGG 29157 Query 452121 GTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAA 452180 | || | ||||| | | ||||| || ||| |||| || |||| | ||||| Sbjct 29158 GAGGTGTTATGACAGCTCTTATTAAGCGGAACACTACTATCCCAACGAAAACGTCTCAAA 29217 Query 452181 CATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGT 452226 |||||| ||| |||||||| || ||||| |||||| || Sbjct 29218 CATTTACCACATACTCCGATAACCAGCCTGGTGTCCTTATTCAGGT 29263 >seq21486 Length=1089 Score = 118 bits (130), Expect = 4e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||||||||| | || |||||||| || || | || || || | || Sbjct 377 AATGCAAATTTTCGTTAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTC 318 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||| ||| ||||| ||| ||||| || ||||| || ||||| || ||||| Sbjct 317 GGATACCATCGAAAACGTTAAAGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCA 258 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| || || || || | || |||||||| || ||||| | || || |||| ||||| Sbjct 257 ACAGCGATTGATCTTTGCCGGAAAACAACTGGAGGATGGTCGTACGCTGTCGGACTATAA 198 Query 391229 TATTGATAAGGATGCAACACTTCAC 391253 ||| | ||||| | || |||||| Sbjct 197 TATCCAGAAGGAATCGACGCTTCAC 173 Score = 86.0 bits (94), Expect = 2e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| |||| || ||||| || ||||| || |||||| | ||| Sbjct 1039 ATGCAAATCTTTGTAAAAACGTTGACAGGCAAAACAATCACTCTAGAAGTTGAAGCCTCT 980 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || |||||||| || ||||||||||| || ||||| Sbjct 979 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCGCCAGATCAG 920 Query 391170 CAACGTTTAATTTTC 391184 || ||| | |||||| Sbjct 919 CAGCGTCTTATTTTC 905 >seq13328 Length=1679 Score = 114 bits (126), Expect = 5e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| |||||| |||||||||| || ||||| ||||| || ||||| ||| Sbjct 47 ATGCAAATATTCGTGAAAACATTGACTGGTAAGACGATTACCCTTGAGGTAGAATCGTCT 106 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || |||||||| ||||||||||| || || |||||||| Sbjct 107 GATACCATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAAGGTATCCCACCTGATCAG 166 Query 391170 CAACGTTTAATTTTCTCAGGGAA 391192 ||||| | ||||| |||| || Sbjct 167 CAACGACTTATTTTTGCAGGTAA 189 >seq4328 Length=4061 Score = 91.5 bits (100), Expect = 6e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 451490 GTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTA 451549 |||| |||||| |||||||| ||| |||| || || ||| |||| || | || || Sbjct 3616 GTATATGATTTGGGTGGAGGTACTTTCGATATATCGGTTCTTGAAATTCAAAAAGGTGTT 3675 Query 451550 TTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCA 451609 || ||||| ||| |||||||||||||||| || || ||||||||| | ||||||||| Sbjct 3676 TTCGAAGTGAAGTCAACCAATGGTGATACATTCCTTGGTGGTGAAGATTTCGATAATGCA 3735 >seq39641 Length=587 Score = 86.0 bits (94), Expect = 2e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || ||||||||||| || || | || || ||| ||||| Sbjct 187 ATGCAAATTTTTGTAAAAACTCTTACTGGTAAAACGATCACATTGGAAGTAGAAGCATCT 246 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | ||| ||||| || || || ||||||||||| || |||||| Sbjct 247 GATACTATCGAGAATGTGAAAGCGAAAATCCAGGACAAAGAAGGAATTCCACCGGATCAA 306 Query 391170 CAACGTTTAATTTTC 391184 || || || || ||| Sbjct 307 CAGCGATTGATCTTC 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974567326702976