Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq4886 165 3e-35
seq3 163 1e-34
seq21486 118 4e-21
seq13328 114 5e-20
seq4328 91.5 6e-13
seq39641 86.0 2e-11
>seq4886
Length=3728
Score = 165 bits (182), Expect = 3e-35
Identities = 169/221 (76%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291
||||| || |||||||||||||||||| | |||||||| |||||||||||||| ||
Sbjct 2416 AAAACCTTCGCTCCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAATTGCG 2357
Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351
||| |||| |||| ||| | ||||||| | || || || ||||| || |||
Sbjct 2356 GAAGCATATCTTGGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTTTAAT 2297
Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGA 451411
||||||||||| ||||| |||||||||||||| |||||| || | |||||| | ||
Sbjct 2296 GATGCACAACGCCAAGCCACTAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTCCGT 2237
Query 451412 ATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452
|| || |||||||| ||||| || ||| | || ||||| ||
Sbjct 2236 ATCATCAATGAACCAACAGCTGCCGCTATTGCTTATGGGCT 2196
Score = 100 bits (110), Expect = 1e-15
Identities = 166/238 (70%), Gaps = 10/238 (4%)
Strand=Plus/Minus
Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050
||||| ||||||||||| ||||||||||| ||||| ||||| | | || | |||
Sbjct 1163 AATCCAGATGAAGCTGTAGCATATGGTGCAGCAGTCCAAGCTGGTGTTAT------TTCG 1110
Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110
| ||| |||| || || || | ||| ||||||| | ||| | ||||||| ||
Sbjct 1109 GGTGAAGAAAGCACTGGTGACATAGTATTATTAGATGTGAATCCTTTGACTCTTGGTATT 1050
Query 452111 GAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGA--ACTTCTATTCCTTGTA 452168
||||||| |||||| | ||||| || | ||| || |||| ||| ||| ||| |
Sbjct 1049 GAAACAGTTGGTGGTGTTATGACCAAACTTATTCAA--AGGAACACTGTTATCCCTACCA 992
Query 452169 AAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGT 452226
| || ||||||| ||| ||| ||| |||||| || ||| || || ||||| ||
Sbjct 991 AGAAAAGTCAAATCTTTTCTACGGCAGCTGATAATCAGCCAACAGTTACCATTCAGGT 934
>seq3
Length=46552
Score = 163 bits (180), Expect = 1e-34
Identities = 176/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276
|| || || || || ||||| || |||| |||||||||||||| |||||| | ||||
Sbjct 27796 TACAAGGGCGAGACGAAAACCTTCACTCCAGAAGAAATTTCATCAATGGTTTTGGTTAAA 27855
Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336
||||| ||||| || ||| || | ||||| | | || | ||||| || || || ||
Sbjct 27856 ATGAAGGAAACTGCTGAAGCATTTCTTGGTCATGCGGTCAAGGATGCCGTCATCACAGTC 27915
Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396
|| || ||||||||||| |||| || |||||||| |||||| | || |||||||||
Sbjct 27916 CCTGCGTATTTCAATGACTCACAGCGACAAGCAACGAAAGATTCCGGTGCAATTGCTGGT 27975
Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449
| ||||| | |||||||| |||||||| |||||||| ||| | || |||||
Sbjct 27976 CTGAATGTCTTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGG 28028
Score = 132 bits (146), Expect = 2e-25
Identities = 194/272 (71%), Gaps = 2/272 (1%)
Strand=Plus/Plus
Query 452220 TTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTA 452279
|||| || | ||||| |||||||| |||||| |||| || || | || ||||
Sbjct 24259 TTCAGGTTTACGAAGGTGAACGTGCGATGACAAGAGACAACAACCTGTTGGGCAAATTCG 24318
Query 452280 CTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATG 452339
||||| ||||| ||| || | || || ||||| ||| | || | ||||
Sbjct 24319 AACTTTCTGGAATTCCGCCTGCTCCTCGTGGTGTGCCACAAATCGAAGTCACTTTTGATA 24378
Query 452340 TTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAA 452399
| |||||||| |||||||| ||||| |||| || ||||| |||| || || ||
Sbjct 24379 TCGATGCAAACGGTATTCTAAATGTCTCTGCACAGGATAAATCCACTGGCAAG-CACAAT 24437
Query 452400 AA-ATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTA 452458
|| ||||||||||| ||||||||| ||||| || || || || || |||| ||||||
Sbjct 24438 AAGATTACAATTACCAATGATAAAGGACGTTTGTCGAAGGATGAAATCGAAAGAATGGTT 24497
Query 452459 GATGAAGCAGAAAAATTCAAGGATGATGATGA 452490
|| ||||| ||||| | ||||| |||||||||
Sbjct 24498 GAGGAAGCCGAAAAGTACAAGGCTGATGATGA 24529
Score = 122 bits (134), Expect = 3e-22
Identities = 227/328 (69%), Gaps = 4/328 (1%)
Strand=Plus/Plus
Query 452231 GAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAAC 452290
||||| |||||||| ||||| ||| |||||| || || |||| | ||
Sbjct 29366 GAAGGTGAACGTGCTATGACGAAAGACAATAATCTGCTTGGTAAATTCGAGTTGTCTGGA 29425
Query 452291 ATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAAT 452350
||||| ||| || | || || ||||||||| |||| | |||| |||| || ||
Sbjct 29426 ATTCCACCTGCTCCTCGTGGTGTGCCGCAAATTGAAGTTACTTTTGATATTGACGCGAAC 29485
Query 452351 GGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAA-ATTACAAT 452409
|| ||| | ||||| ||| || |||||| | |||||| ||||| || ||||| ||
Sbjct 29486 GGAATTTTGAATGTTTCCGCACAAGATAAATCAACAGGAAAA-CAGAACAAGATTACGAT 29544
Query 452410 TACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGA 452469
||| || |||||| ||||| || || || || |||||| |||||| | ||||| ||
Sbjct 29545 TACCAACGATAAAGGACGTTTGTCAAAGGATGAGATTGAACGGATGGTACAGGAAGCTGA 29604
Query 452470 AAAATTCAAGGATGATGATGAACAAGTTAGAAAACATGTTGAAGCTAAAAACAAACTAGA 452529
|||| ||||| ||||||||| | | | | | | ||| ||||||||| || ||
Sbjct 29605 GAAATACAAGGCAGATGATGAAGCACAGAAAGATCGTATTGCAGCTAAAAATGCTCTGGA 29664
Query 452530 AGGATATTGTTATCAA-ATGAAACAAAC 452556
| |||| | |||| |||||||||||
Sbjct 29665 ATCATATGCAT-TCAATATGAAACAAAC 29691
Score = 91.5 bits (100), Expect = 6e-13
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265
|||||||| | |||||||||||||| ||||| || | || |||||||| ||||||||||
Sbjct 22235 TTCAAGTAGAGTATAAAGGTGAAACAAAAACATTCACACCAGAAGAAATATCATCTATGG 22294
Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGG 451305
|| | |||||||| |||||||| ||| || | ||||
Sbjct 22295 TTTTGGGAAAAATGAAGGAAACAGCTGAAGCATTTCTTGG 22334
Score = 87.8 bits (96), Expect = 7e-12
Identities = 156/226 (69%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 452003 GCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGT--TCAGATGATGAAA 452060
||||| ||||||||||||||||| |||||||||||||| | ||| | || | |||
Sbjct 29040 GCTGTGGCATATGGTGCTGCAGTGCAAGCAGCTATTCTTTCTGGTGATAAGTCG--GAAG 29097
Query 452061 AATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTG 452120
|| ||| | ||||| | || || |||| || || ||||| |||||||||| |
Sbjct 29098 CCGTACAAGACTTGTTGTTACTCGACGTCGCACCGCTTTCACTTGGTATTGAAACAGCGG 29157
Query 452121 GTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAA 452180
| || | ||||| | | ||||| || ||| |||| || |||| | |||||
Sbjct 29158 GAGGTGTTATGACAGCTCTTATTAAGCGGAACACTACTATCCCAACGAAAACGTCTCAAA 29217
Query 452181 CATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGT 452226
|||||| ||| |||||||| || ||||| |||||| ||
Sbjct 29218 CATTTACCACATACTCCGATAACCAGCCTGGTGTCCTTATTCAGGT 29263
>seq21486
Length=1089
Score = 118 bits (130), Expect = 4e-21
Identities = 149/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | |||||||||||||| | || |||||||| || || | || || || | ||
Sbjct 377 AATGCAAATTTTCGTTAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTC 318
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
|||| ||| ||| ||||| ||| ||||| || ||||| || ||||| || |||||
Sbjct 317 GGATACCATCGAAAACGTTAAAGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCA 258
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
||| || || || || | || |||||||| || ||||| | || || |||| |||||
Sbjct 257 ACAGCGATTGATCTTTGCCGGAAAACAACTGGAGGATGGTCGTACGCTGTCGGACTATAA 198
Query 391229 TATTGATAAGGATGCAACACTTCAC 391253
||| | ||||| | || ||||||
Sbjct 197 TATCCAGAAGGAATCGACGCTTCAC 173
Score = 86.0 bits (94), Expect = 2e-11
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || ||||| |||| || ||||| || ||||| || |||||| | |||
Sbjct 1039 ATGCAAATCTTTGTAAAAACGTTGACAGGCAAAACAATCACTCTAGAAGTTGAAGCCTCT 980
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || ||| | | || || |||||||| || ||||||||||| || |||||
Sbjct 979 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCGCCAGATCAG 920
Query 391170 CAACGTTTAATTTTC 391184
|| ||| | ||||||
Sbjct 919 CAGCGTCTTATTTTC 905
>seq13328
Length=1679
Score = 114 bits (126), Expect = 5e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| |||||| |||||||||| || ||||| ||||| || ||||| |||
Sbjct 47 ATGCAAATATTCGTGAAAACATTGACTGGTAAGACGATTACCCTTGAGGTAGAATCGTCT 106
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| |||||| | | || |||||||| ||||||||||| || || ||||||||
Sbjct 107 GATACCATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAAGGTATCCCACCTGATCAG 166
Query 391170 CAACGTTTAATTTTCTCAGGGAA 391192
||||| | ||||| |||| ||
Sbjct 167 CAACGACTTATTTTTGCAGGTAA 189
>seq4328
Length=4061
Score = 91.5 bits (100), Expect = 6e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 451490 GTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTA 451549
|||| |||||| |||||||| ||| |||| || || ||| |||| || | || ||
Sbjct 3616 GTATATGATTTGGGTGGAGGTACTTTCGATATATCGGTTCTTGAAATTCAAAAAGGTGTT 3675
Query 451550 TTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCA 451609
|| ||||| ||| |||||||||||||||| || || ||||||||| | |||||||||
Sbjct 3676 TTCGAAGTGAAGTCAACCAATGGTGATACATTCCTTGGTGGTGAAGATTTCGATAATGCA 3735
>seq39641
Length=587
Score = 86.0 bits (94), Expect = 2e-11
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || ||||| || ||||||||||| || || | || || ||| |||||
Sbjct 187 ATGCAAATTTTTGTAAAAACTCTTACTGGTAAAACGATCACATTGGAAGTAGAAGCATCT 246
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || || | | ||| ||||| || || || ||||||||||| || ||||||
Sbjct 247 GATACTATCGAGAATGTGAAAGCGAAAATCCAGGACAAAGAAGGAATTCCACCGGATCAA 306
Query 391170 CAACGTTTAATTTTC 391184
|| || || || |||
Sbjct 307 CAGCGATTGATCTTC 321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1974567326702976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |