Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq3 196 4e-44
seq4886 161 7e-34
seq471 89.7 4e-12
>seq3
Length=46552
Score = 196 bits (216), Expect = 4e-44
Identities = 267/370 (72%), Gaps = 7/370 (2%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
|| || || | |||||| |||| ||| || || ||||||||||| ||||||| ||| |||
Sbjct 28040 TTCTTGTCCAAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAAGACA 27981
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| |||||||||||| || | |||||| || ||||||| ||||| || || |||||
Sbjct 27980 TTCAGACCAGCAATTGCACCGGAATCTTTCGTTGCTTGTCGCTGTGAGTCATTGAAATAC 27921
Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344
||||| || || || |||||||| | || | | ||||| | | || || ||||
Sbjct 27920 GCAGGGACTGTGATGACGGCATCCTTGACCGCATGACCAAGAAATGCTTCAGCAGTTTCC 27861
Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GGGAATATTGCTTGGATTCAT 518402
||||||||| |||| |||||||||||||| ||||| | ||| || || | ||
Sbjct 27860 TTCATTTTAACCAAAACCATTGATGAAATTTCTTCTGGAGTGAAGGTT--TTCGTCTCGC 27803
Query 518403 TTTGATATGATACTTCAAAATATGGTTTA---TTACCAACATTAATAACTTTAAATGGCC 518459
| ||| || | | | ||||||| |||| |||| |||||||| |||||||
Sbjct 27802 CCTTGTATTCAACCTGCACTTTTGGTTTACCGCCACCAGCATTTATAACTTTGAATGGCC 27743
Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519
| | ||||||||||||||| || | |||| ||| | | |||||| |||||||| |
Sbjct 27742 AATGTTTCATATCTGATTGTACTGATCCATCATCAAATTTACGACCAATCAATCGTTTCG 27683
Query 518520 CATCAAAAAT 518529
|||| ||||
Sbjct 27682 CATCTGAAAT 27673
Score = 125 bits (138), Expect = 5e-23
Identities = 181/253 (72%), Gaps = 2/253 (1%)
Strand=Plus/Minus
Query 517626 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 517685
||||||| ||||||| ||| ||| |||| ||| ||| ||| |||| ||| || ||||
Sbjct 28869 CTTCATCTGGATTAATGCTTTTATTCAGTTCTTTGCCAGAGAAGAAATCTGATAGGAGTT 28810
Query 517686 GTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 517744
||| ||| || |||||||| | |||||| || ||||||||||| ||||| || || | |
Sbjct 28809 -TCTGTACTTTCGGAATACGCGTTGATCCACCTACTAATACAATATCATGAACTTGAGCT 28751
Query 517745 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAG 517804
||||||| || | || || |||| ||||| || || | | | | |||||
Sbjct 28750 TTATCCATCTTCGCGTCACGCAATGCTTTCTCAACCGGATCCATAGTTGAGCGGAACAAA 28691
Query 517805 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 517864
|| | ||| | ||||| || ||| | ||||| || | | |||| ||||| |||
Sbjct 28690 TCAGCACATAACTCTTCAAAACGAGCACGAGTAATGTTGGTGTAAAAATCGATTCCCTCG 28631
Query 517865 AACAAAGAATCAA 517877
|||||||||||||
Sbjct 28630 AACAAAGAATCAA 28618
Score = 123 bits (136), Expect = 2e-22
Identities = 113/143 (79%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
|||||||| ||||||||||||| ||||||||||||||| || || || |||| | |||
Sbjct 22796 TTTTTATCTAGACCATACGCAATAGCAGCAGCAGTTGGCTCGTTGATGATTCGAAGGACA 22737
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| | |||| ||| || |||||||| || ||||||| ||| |||||||| |||||
Sbjct 22736 TTCAAGCCAGATATTGCACCCGCATCTTTGGTTGCTTGTCGTTGAGAATCGTTGAAATAC 22677
Query 518285 GCAGGAACAGTAATAACGGCATC 518307
|| || ||||| | ||||||||
Sbjct 22676 GCTGGCACAGTTACTACGGCATC 22654
Score = 95.1 bits (104), Expect = 9e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582
|||||| ||||||| || || |||||| | |||| ||| |||||||| ||||| ||
Sbjct 27423 CAAAAACAGTATTGTGCGGGTTCATTGCAACCTGATTTTTAGCTGCATCACCAATAAGGC 27364
Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629
|||| || || ||||||| ||||||||||| ||||| || ||||||
Sbjct 27363 GTTCAGTGTCGGTAAATGCCACATATGATGGCGTTGTTCGGTTACCT 27317
Score = 93.3 bits (102), Expect = 3e-13
Identities = 138/193 (72%), Gaps = 7/193 (4%)
Strand=Plus/Minus
Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG--AATATTGCT 518393
|| |||| |||||||| | |||| ||| ||||| |||| |||||| | ||| || |
Sbjct 22319 GCTGTTTCCTTCATTTTTCCCAAAACCATAGATGATATTTCTTCTGGTGTGAATGTT--T 22262
Query 518394 TGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA---TTAATAACTT 518450
| | |||| || ||| ||||| || | ||||| |||| || || |||||||
Sbjct 22261 TTGTTTCACCTTTATACTCTACTTGAACCTTCGGTTTGCCACCATCAGCATTGATAACTT 22202
Query 518451 TAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 518510
| || ||||| | ||||||||||| || || | | |||| ||| | |||||| || |
Sbjct 22201 TGAAGGGCCAATGCTTCATATCTGACTGTACCGCTGGATCATCAAATTTTCTACCGATCA 22142
Query 518511 ATCGTTTTGCATC 518523
||||||||||||
Sbjct 22141 GTCGTTTTGCATC 22129
>seq4886
Length=3728
Score = 161 bits (178), Expect = 7e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215
||| ||| || ||||| || ||||| |||| ||| ||||| ||||||||||| || ||
Sbjct 2178 TTGCCTTCCTTCTTATCCAGCCCATAAGCAATAGCGGCAGCTGTTGGTTCATTGATGATA 2237
Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275
| | |||||| || || ||||| | |||||||||||||||||||| | ||||| |||
Sbjct 2238 CGGACAACATTGAGGCCGGCAATAGTACCTGCATCTTTAGTGGCTTGGCGTTGTGCATCA 2297
Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT 518335
||||| || ||||| || || | ||| |||| | |||||||| |||| ||| ||
Sbjct 2298 TTAAAGTAAGCAGGTACTGTGACAACTGCATGTTTCACTTCTTTTCCAAGATATGCTTCC 2357
Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382
|| ||| ||||||||||| | || ||| | |||||||| ||| ||
Sbjct 2358 GCAATTTCTTTCATTTTACCGAGAACCATCGCTGAAATTTCTTCAGG 2404
>seq471
Length=13412
Score = 89.7 bits (98), Expect = 4e-12
Identities = 130/185 (70%), Gaps = 8/185 (4%)
Strand=Plus/Minus
Query 668823 AAGTCACTAAATCAATGTCTGAAAGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATT 668882
|||||| | || ||| ||||||||| | |||||||| || || ||||| ||||
Sbjct 5044 AAGTCAATCAAACAACGTCTGAAAG--------GGAAAGAAGGCCGAATCAGAGGGAATT 4993
Query 668883 TGATGGGAAAACGTGTCGATATGTCTGCACGTACAGTTATTACTTCTGATCCCAATATTG 668942
||||||| ||||| || ||| | || || || || || ||||| | ||||| ||| |
Sbjct 4992 TGATGGGCAAACGAGTGGATTTTTCAGCTCGAACTGTGATTACACCAGATCCAAATCTGC 4933
Query 668943 CTCTCAATGAAGTTGGTGTTCCTCTTATTATTGCTAAAAATCTTACTTTTGACGAAATTG 669002
| | || |||||| || |||| || |||||| |||| | || || |||||||
Sbjct 4932 CCATAGATACAGTTGGCGTGCCTCGTACTATTGCACAAAACATGACATTCCCAGAAATTG 4873
Query 669003 TAACA 669007
| |||
Sbjct 4872 TTACA 4868
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3778565929575232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |