Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3 196 4e-44 seq4886 161 7e-34 seq471 89.7 4e-12 >seq3 Length=46552 Score = 196 bits (216), Expect = 4e-44 Identities = 267/370 (72%), Gaps = 7/370 (2%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || | |||||| |||| ||| || || ||||||||||| ||||||| ||| ||| Sbjct 28040 TTCTTGTCCAAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAAGACA 27981 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || |||||||||||| || | |||||| || ||||||| ||||| || || ||||| Sbjct 27980 TTCAGACCAGCAATTGCACCGGAATCTTTCGTTGCTTGTCGCTGTGAGTCATTGAAATAC 27921 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 ||||| || || || |||||||| | || | | ||||| | | || || |||| Sbjct 27920 GCAGGGACTGTGATGACGGCATCCTTGACCGCATGACCAAGAAATGCTTCAGCAGTTTCC 27861 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GGGAATATTGCTTGGATTCAT 518402 ||||||||| |||| |||||||||||||| ||||| | ||| || || | || Sbjct 27860 TTCATTTTAACCAAAACCATTGATGAAATTTCTTCTGGAGTGAAGGTT--TTCGTCTCGC 27803 Query 518403 TTTGATATGATACTTCAAAATATGGTTTA---TTACCAACATTAATAACTTTAAATGGCC 518459 | ||| || | | | ||||||| |||| |||| |||||||| ||||||| Sbjct 27802 CCTTGTATTCAACCTGCACTTTTGGTTTACCGCCACCAGCATTTATAACTTTGAATGGCC 27743 Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519 | | ||||||||||||||| || | |||| ||| | | |||||| |||||||| | Sbjct 27742 AATGTTTCATATCTGATTGTACTGATCCATCATCAAATTTACGACCAATCAATCGTTTCG 27683 Query 518520 CATCAAAAAT 518529 |||| |||| Sbjct 27682 CATCTGAAAT 27673 Score = 125 bits (138), Expect = 5e-23 Identities = 181/253 (72%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 517626 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 517685 ||||||| ||||||| ||| ||| |||| ||| ||| ||| |||| ||| || |||| Sbjct 28869 CTTCATCTGGATTAATGCTTTTATTCAGTTCTTTGCCAGAGAAGAAATCTGATAGGAGTT 28810 Query 517686 GTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 517744 ||| ||| || |||||||| | |||||| || ||||||||||| ||||| || || | | Sbjct 28809 -TCTGTACTTTCGGAATACGCGTTGATCCACCTACTAATACAATATCATGAACTTGAGCT 28751 Query 517745 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAG 517804 ||||||| || | || || |||| ||||| || || | | | | ||||| Sbjct 28750 TTATCCATCTTCGCGTCACGCAATGCTTTCTCAACCGGATCCATAGTTGAGCGGAACAAA 28691 Query 517805 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 517864 || | ||| | ||||| || ||| | ||||| || | | |||| ||||| ||| Sbjct 28690 TCAGCACATAACTCTTCAAAACGAGCACGAGTAATGTTGGTGTAAAAATCGATTCCCTCG 28631 Query 517865 AACAAAGAATCAA 517877 ||||||||||||| Sbjct 28630 AACAAAGAATCAA 28618 Score = 123 bits (136), Expect = 2e-22 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| ||||||||||||| ||||||||||||||| || || || |||| | ||| Sbjct 22796 TTTTTATCTAGACCATACGCAATAGCAGCAGCAGTTGGCTCGTTGATGATTCGAAGGACA 22737 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | |||| ||| || |||||||| || ||||||| ||| |||||||| ||||| Sbjct 22736 TTCAAGCCAGATATTGCACCCGCATCTTTGGTTGCTTGTCGTTGAGAATCGTTGAAATAC 22677 Query 518285 GCAGGAACAGTAATAACGGCATC 518307 || || ||||| | |||||||| Sbjct 22676 GCTGGCACAGTTACTACGGCATC 22654 Score = 95.1 bits (104), Expect = 9e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| ||||||| || || |||||| | |||| ||| |||||||| ||||| || Sbjct 27423 CAAAAACAGTATTGTGCGGGTTCATTGCAACCTGATTTTTAGCTGCATCACCAATAAGGC 27364 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 |||| || || ||||||| ||||||||||| ||||| || |||||| Sbjct 27363 GTTCAGTGTCGGTAAATGCCACATATGATGGCGTTGTTCGGTTACCT 27317 Score = 93.3 bits (102), Expect = 3e-13 Identities = 138/193 (72%), Gaps = 7/193 (4%) Strand=Plus/Minus Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG--AATATTGCT 518393 || |||| |||||||| | |||| ||| ||||| |||| |||||| | ||| || | Sbjct 22319 GCTGTTTCCTTCATTTTTCCCAAAACCATAGATGATATTTCTTCTGGTGTGAATGTT--T 22262 Query 518394 TGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA---TTAATAACTT 518450 | | |||| || ||| ||||| || | ||||| |||| || || ||||||| Sbjct 22261 TTGTTTCACCTTTATACTCTACTTGAACCTTCGGTTTGCCACCATCAGCATTGATAACTT 22202 Query 518451 TAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 518510 | || ||||| | ||||||||||| || || | | |||| ||| | |||||| || | Sbjct 22201 TGAAGGGCCAATGCTTCATATCTGACTGTACCGCTGGATCATCAAATTTTCTACCGATCA 22142 Query 518511 ATCGTTTTGCATC 518523 |||||||||||| Sbjct 22141 GTCGTTTTGCATC 22129 >seq4886 Length=3728 Score = 161 bits (178), Expect = 7e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 ||| ||| || ||||| || ||||| |||| ||| ||||| ||||||||||| || || Sbjct 2178 TTGCCTTCCTTCTTATCCAGCCCATAAGCAATAGCGGCAGCTGTTGGTTCATTGATGATA 2237 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 | | |||||| || || ||||| | |||||||||||||||||||| | ||||| ||| Sbjct 2238 CGGACAACATTGAGGCCGGCAATAGTACCTGCATCTTTAGTGGCTTGGCGTTGTGCATCA 2297 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT 518335 ||||| || ||||| || || | ||| |||| | |||||||| |||| ||| || Sbjct 2298 TTAAAGTAAGCAGGTACTGTGACAACTGCATGTTTCACTTCTTTTCCAAGATATGCTTCC 2357 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 || ||| ||||||||||| | || ||| | |||||||| ||| || Sbjct 2358 GCAATTTCTTTCATTTTACCGAGAACCATCGCTGAAATTTCTTCAGG 2404 >seq471 Length=13412 Score = 89.7 bits (98), Expect = 4e-12 Identities = 130/185 (70%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 668823 AAGTCACTAAATCAATGTCTGAAAGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATT 668882 |||||| | || ||| ||||||||| | |||||||| || || ||||| |||| Sbjct 5044 AAGTCAATCAAACAACGTCTGAAAG--------GGAAAGAAGGCCGAATCAGAGGGAATT 4993 Query 668883 TGATGGGAAAACGTGTCGATATGTCTGCACGTACAGTTATTACTTCTGATCCCAATATTG 668942 ||||||| ||||| || ||| | || || || || || ||||| | ||||| ||| | Sbjct 4992 TGATGGGCAAACGAGTGGATTTTTCAGCTCGAACTGTGATTACACCAGATCCAAATCTGC 4933 Query 668943 CTCTCAATGAAGTTGGTGTTCCTCTTATTATTGCTAAAAATCTTACTTTTGACGAAATTG 669002 | | || |||||| || |||| || |||||| |||| | || || ||||||| Sbjct 4932 CCATAGATACAGTTGGCGTGCCTCGTACTATTGCACAAAACATGACATTCCCAGAAATTG 4873 Query 669003 TAACA 669007 | ||| Sbjct 4872 TTACA 4868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778565929575232