Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4886 158 2e-33 seq3 141 1e-28 seq3634 109 7e-19 seq4215 82.4 1e-10 >seq4886 Length=3728 Score = 158 bits (174), Expect = 2e-33 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 |||||||| || || || || ||||| || || ||||||||||| || ||||| | | Sbjct 2187 TTCTTATCCAGCCCATAAGCAATAGCGGCAGCTGTTGGTTCATTGATGATACGGACAACA 2246 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || ||||| |||||||| | |||||||| || ||||| ||||| | ||| |||||||| Sbjct 2247 TTGAGGCCGGCAATAGTACCTGCATCTTTAGTGGCTTGGCGTTGTGCATCATTAAAGTAA 2306 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || || || || | | |||| || || ||||| | |||||| || ||| Sbjct 2307 GCAGGTACTGTGACAACTGCATGTTTCACTTCTTTTCCAAGATATGCTTCCGCAATTTCT 2366 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 |||||||| |||||||||| |||||| ||||||| Sbjct 2367 TTCATTTTACCGAGAACCATCGCTGAAATTTCTTCAG 2403 >seq3 Length=46552 Score = 141 bits (156), Expect = 1e-28 Identities = 220/312 (71%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACA 7653 ||||| || | ||| || || ||||| || || ||||||||||| ||||| || |||||| Sbjct 28040 TTCTTGTCCAAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAAGACA 27981 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||||| |||||||| | | | ||||||||| |||||||| || || || || || || Sbjct 27980 -TTCAGACCAGCAATTGCACCGGAATCTTTCGTTGCTTGTCGCTGTGAGTCATTGAAATA 27922 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 || ||||| || | ||| || ||| |||| | ||| ||| | | ||| || | || Sbjct 27921 CGCAGGGACTGTGATGACGGCATCCTTGACCGCATGACCAAGAAATGCTTCAGCAGTTTC 27862 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACC 7833 |||||||| | |||||| |||||||| ||||| | | || |||||| || || Sbjct 27861 CTTCATTTTAACCAAAACCATTGATGAAATTTCTTCTGGAGTGAAGGTTTTCGTCTCGCC 27802 Query 7834 GTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCA 7893 || | ||||| | | | |||||| | || || | ||||| || | | ||| Sbjct 27801 CTTGTATTCAACCTGCACTTTTGGTTTACCGCCACCAGCATTTATAACTTTGAATGGCCA 27742 Query 7894 ATCTTTCATATC 7905 || ||||||||| Sbjct 27741 ATGTTTCATATC 27730 Score = 134 bits (148), Expect = 2e-26 Identities = 184/257 (72%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 7058 TCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGT 7117 ||||| || ||||| |||||||||||||||| || || |||| |||| | || Sbjct 28867 TCATCTGGATTAATGCTTTTATTCAGTTCTTTGCCAGAGAAGAAATCTGATAGGAGTTTC 28808 Query 7118 TGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTA 7177 || | |||||| || || || |||||||| || || || || |||| |||| | |||| Sbjct 28807 TGTACTTTCGGAATACGCGTTGATCCACCTACTAATACAATATCATGAACTTGAGCTTTA 28748 Query 7178 TCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCC 7237 || ||||| | ||| || | || ||| || || || |||||| | |||||||| || Sbjct 28747 TCCATCTTCGCGTCACGCAATGCTTTCTCAACCGGATCCATAGTTGAGCGGAACAAATCA 28688 Query 7238 ATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTAT 7297 ||| | || |||||||| ||||| |||||| || || ||||| | || ||| | Sbjct 28687 GCACATAACTCTTCAAAACGAGCACGAGTAATGTTGGTGTAAAAATCGATTCCCTCGAAC 28628 Query 7298 AACGAATCAATTTCAAT 7314 || |||||||| || || Sbjct 28627 AAAGAATCAATCTCGAT 28611 Score = 131 bits (144), Expect = 2e-25 Identities = 185/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 7056 CCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTT 7115 ||||||| || ||||| |||| ||||||||||| || |||| |||| || | || || Sbjct 23824 CCTCATCTGGATTAATACTTTTGTTCAGTTCTTTTCCAGAAAAAAAATCGGAGAGCAATT 23765 Query 7116 GTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATT 7175 ||| | ||| || || || || || || || |||||||| || |||| || || | || Sbjct 23764 TTTGCACTTTTGGAATACGAGTAGAACCGCCAACCAAAACAATATCATGCATTTGAGCTT 23705 Query 7176 TATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGT 7235 |||| || || | || || |||| ||| || || || ||||| | ||| ||||| | Sbjct 23704 TATCCATTTTAGCATCACGCAGTGCTTTCTCAACCGGATCCATGGTTGAACGAAACAAAT 23645 Query 7236 CCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGT 7295 | ||| || || |||||||| || ||||| || || || || || |||||| Sbjct 23644 CAGCACAAAGCTCTTCAAAACGGGCTCGGGTGATACTGGTGTAAAAGTCGGTACCGTCGA 23585 Query 7296 ATAACGAATCAATTTCAATG 7315 | | ||||||||||||||| Sbjct 23584 AGAGTGAATCAATTTCAATG 23565 Score = 114 bits (126), Expect = 2e-20 Identities = 192/275 (70%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || | || || || || || || || |||||| |||||| || || || || Sbjct 29626 TTCATCATCTGCCTTGTATTTCTCAGCTTCCTGTACCATCCGTTCAATCTCATCCTTTGA 29567 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTT 6686 || | || ||||| || |||||||||||||| ||| | ||| || | | ||||||| Sbjct 29566 CAAACGTCCTTTATCGTTGGTAATCGTAATCTTGTTCTGTTTT-CCTGTTGATTTATCTT 29508 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 || ||||||||||| || || || |||| ||| || | || | |||||| || Sbjct 29507 GTGCGGAAACATTCAAAATTCCGTTCGCGTCAATATCAAAAGTAACTTCAATTTGCGGCA 29448 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 ||| | || || | |||||| || | || || ||| ||||||| | | | || || Sbjct 29447 CACCACGAGGAGCAGGTGGAATTCCAGACAACTCGAATTTACCAAGCAGATTATTGTCTT 29388 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATT 6841 ||| | | |||||||||||| || || | |||| Sbjct 29387 TCGTCATAGCACGTTCACCTTCGTAAACCTAAATT 29353 Score = 105 bits (116), Expect = 8e-18 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 || ||||| ||||| ||||| ||||| || || ||||| || || || || ||||| ||| Sbjct 22796 TTTTTATCTAGACCATACGCAATAGCAGCAGCAGTTGGCTCGTTGATGATTCGAAGGACA 22737 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 |||| ||||| || | |||||||||| || ||||||||||| |||||||| || || Sbjct 22736 -TTCAAGCCAGATATTGCACCCGCATCTTTGGTTGCTTGTCGTTGAGAATCGTTGAAATA 22678 Query 7714 GGCCGGGACCGTTACGACCGCGTCC 7738 || || || ||||| || || ||| Sbjct 22677 CGCTGGCACAGTTACTACGGCATCC 22653 Score = 102 bits (112), Expect = 1e-16 Identities = 238/353 (67%), Gaps = 12/353 (3%) Strand=Plus/Minus Query 6496 TTCGACCGTTCCTTTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGC--CT---C 6549 ||||| |||| ||||| |||| | | ||| ||| | | |||| ||||| || | Sbjct 24602 TTCGATCGTTTGCTTCATGTTGAAAGC-GTATGATTCTAAAGCATTTTTCGCTGCTATGC 24544 Query 6550 GACCTTTTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTT 6609 || |||||| ||| | ||||| ||| | || |||||||| || || | ||||| | Sbjct 24543 GATCTTTTT-GCGCA----TCATCATCAGCCTTGTACTTTTCGGCTTCCTCAACCATTCT 24489 Query 6610 TTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTT 6669 ||| || || || ||||| || | || |||||||| ||||| |||||||| | | || Sbjct 24488 TTCGATTTCATCCTTCGACAAACGTCCTTTATCATTGGTAATTGTAATCTTATTGTGCTT 24429 Query 6670 ACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCT 6729 || | || ||||| | ||| ||||| | |||||| |||||||| | ||| || | Sbjct 24428 GCCAGTGGATTTATCCTGTGCAGAGACATTTAGAATACCGTTTGCATCGATATCAAAAGT 24369 Query 6730 TACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACC 6789 || | |||||||| ||| | || || | ||||| || | | || ||| | || Sbjct 24368 GACTTCGATTTGTGGCACACCACGAGGAGCAGGCGGAATTCCAGAAAGTTCGAATTTGCC 24309 Query 6790 AAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTG 6842 | | |||| || | | | || |||||||||||| || || | || || Sbjct 24308 CAACAGGTTGTTGTCTCTTGTCATCGCACGTTCACCTTCGTAAACCTGAAATG 24256 >seq3634 Length=4594 Score = 109 bits (120), Expect = 7e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 184231 TTTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAAT 184290 |||||| | ||| ||||| ||||| || | ||||| ||||||||| |||||| | || Sbjct 713 TTTACCTCGAAGAGGAAATACACCATACTTGTCACGTCCAACAACTCCAAGACCTGAAAC 654 Query 184291 TGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGTGT 184350 || | || ||| || ||||||||||| |||| |||||| ||||| | |||| | | Sbjct 653 AGCCAATGATTTGGCTGAATCACCTTCCGTAAGAATAAGCGTACATTGTGCAGAATTCTT 594 Query 184351 GGTACCGGCTTTATTGGCATCGTCGAGTTTTGGAATACCC 184390 ||||| || | ||| ||||| || |||||||| | |||| Sbjct 593 CGTACCAGCATCATTAGCATCTTCCAGTTTTGGCACACCC 554 >seq4215 Length=4125 Score = 82.4 bits (90), Expect = 1e-10 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 22343 TATCATTTAAAATGCCTATATATACATCGGAAGTTGATGGTATAGGTGTGTTGAAAATTC 22402 |||| ||| | |||| ||||||| | |||||||||| ||| || ||| | | Sbjct 4062 TATCTTTTGACTTGCCAGAATATACAGCTGAAGTTGATGCTATTGGAACATTGCGTTTGC 4003 Query 22403 TAGAAGCGATCCGTTTAGCAGGTCTAACAAAAACGTGTAAA-TTTTATCAGGCATCTACA 22461 | || | || | | | ||| |||| || | | ||||| |||||||| || || ||| Sbjct 4002 TGGATTCCATTCATGCATGTGGTTTAACTAATA-GAGTAAAATTTTATCAAGCTTCAACA 3944 Query 22462 TCAGAGCTCTACGGTAAAGTAAATGAAACTCCACAAAATGAAAATACACCGTTTTACCCG 22521 || || | ||||| |||||| | ||| || ||||| |||| |||||| || || || Sbjct 3943 TCTGAATTGTACGGCAAAGTACAAGAAGTGCCTCAAAAAGAAACTACACCCTTCTATCCT 3884 Query 22522 CGTTCACCATATGG 22535 |||||||| ||||| Sbjct 3883 CGTTCACCTTATGG 3870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634771790516480