Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq4886 158 2e-33
seq3 141 1e-28
seq3634 109 7e-19
seq4215 82.4 1e-10
>seq4886
Length=3728
Score = 158 bits (174), Expect = 2e-33
Identities = 165/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
|||||||| || || || || ||||| || || ||||||||||| || ||||| | |
Sbjct 2187 TTCTTATCCAGCCCATAAGCAATAGCGGCAGCTGTTGGTTCATTGATGATACGGACAACA 2246
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| ||||| |||||||| | |||||||| || ||||| ||||| | ||| ||||||||
Sbjct 2247 TTGAGGCCGGCAATAGTACCTGCATCTTTAGTGGCTTGGCGTTGTGCATCATTAAAGTAA 2306
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774
|| || || || || || || | | |||| || || ||||| | |||||| || |||
Sbjct 2307 GCAGGTACTGTGACAACTGCATGTTTCACTTCTTTTCCAAGATATGCTTCCGCAATTTCT 2366
Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811
|||||||| |||||||||| |||||| |||||||
Sbjct 2367 TTCATTTTACCGAGAACCATCGCTGAAATTTCTTCAG 2403
>seq3
Length=46552
Score = 141 bits (156), Expect = 1e-28
Identities = 220/312 (71%), Gaps = 2/312 (1%)
Strand=Plus/Minus
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACA 7653
||||| || | ||| || || ||||| || || ||||||||||| ||||| || ||||||
Sbjct 28040 TTCTTGTCCAAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAAGACA 27981
Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713
||||| |||||||| | | | ||||||||| |||||||| || || || || || ||
Sbjct 27980 -TTCAGACCAGCAATTGCACCGGAATCTTTCGTTGCTTGTCGCTGTGAGTCATTGAAATA 27922
Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773
|| ||||| || | ||| || ||| |||| | ||| ||| | | ||| || | ||
Sbjct 27921 CGCAGGGACTGTGATGACGGCATCCTTGACCGCATGACCAAGAAATGCTTCAGCAGTTTC 27862
Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACC 7833
|||||||| | |||||| |||||||| ||||| | | || |||||| || ||
Sbjct 27861 CTTCATTTTAACCAAAACCATTGATGAAATTTCTTCTGGAGTGAAGGTTTTCGTCTCGCC 27802
Query 7834 GTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCA 7893
|| | ||||| | | | |||||| | || || | ||||| || | | |||
Sbjct 27801 CTTGTATTCAACCTGCACTTTTGGTTTACCGCCACCAGCATTTATAACTTTGAATGGCCA 27742
Query 7894 ATCTTTCATATC 7905
|| |||||||||
Sbjct 27741 ATGTTTCATATC 27730
Score = 134 bits (148), Expect = 2e-26
Identities = 184/257 (72%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 7058 TCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGT 7117
||||| || ||||| |||||||||||||||| || || |||| |||| | ||
Sbjct 28867 TCATCTGGATTAATGCTTTTATTCAGTTCTTTGCCAGAGAAGAAATCTGATAGGAGTTTC 28808
Query 7118 TGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTA 7177
|| | |||||| || || || |||||||| || || || || |||| |||| | ||||
Sbjct 28807 TGTACTTTCGGAATACGCGTTGATCCACCTACTAATACAATATCATGAACTTGAGCTTTA 28748
Query 7178 TCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCC 7237
|| ||||| | ||| || | || ||| || || || |||||| | |||||||| ||
Sbjct 28747 TCCATCTTCGCGTCACGCAATGCTTTCTCAACCGGATCCATAGTTGAGCGGAACAAATCA 28688
Query 7238 ATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTAT 7297
||| | || |||||||| ||||| |||||| || || ||||| | || ||| |
Sbjct 28687 GCACATAACTCTTCAAAACGAGCACGAGTAATGTTGGTGTAAAAATCGATTCCCTCGAAC 28628
Query 7298 AACGAATCAATTTCAAT 7314
|| |||||||| || ||
Sbjct 28627 AAAGAATCAATCTCGAT 28611
Score = 131 bits (144), Expect = 2e-25
Identities = 185/260 (71%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 7056 CCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTT 7115
||||||| || ||||| |||| ||||||||||| || |||| |||| || | || ||
Sbjct 23824 CCTCATCTGGATTAATACTTTTGTTCAGTTCTTTTCCAGAAAAAAAATCGGAGAGCAATT 23765
Query 7116 GTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATT 7175
||| | ||| || || || || || || || |||||||| || |||| || || | ||
Sbjct 23764 TTTGCACTTTTGGAATACGAGTAGAACCGCCAACCAAAACAATATCATGCATTTGAGCTT 23705
Query 7176 TATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGT 7235
|||| || || | || || |||| ||| || || || ||||| | ||| ||||| |
Sbjct 23704 TATCCATTTTAGCATCACGCAGTGCTTTCTCAACCGGATCCATGGTTGAACGAAACAAAT 23645
Query 7236 CCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGT 7295
| ||| || || |||||||| || ||||| || || || || || ||||||
Sbjct 23644 CAGCACAAAGCTCTTCAAAACGGGCTCGGGTGATACTGGTGTAAAAGTCGGTACCGTCGA 23585
Query 7296 ATAACGAATCAATTTCAATG 7315
| | |||||||||||||||
Sbjct 23584 AGAGTGAATCAATTTCAATG 23565
Score = 114 bits (126), Expect = 2e-20
Identities = 192/275 (70%), Gaps = 2/275 (1%)
Strand=Plus/Minus
Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627
|||||| || | || || || || || || || |||||| |||||| || || || ||
Sbjct 29626 TTCATCATCTGCCTTGTATTTCTCAGCTTCCTGTACCATCCGTTCAATCTCATCCTTTGA 29567
Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTT 6686
|| | || ||||| || |||||||||||||| ||| | ||| || | | |||||||
Sbjct 29566 CAAACGTCCTTTATCGTTGGTAATCGTAATCTTGTTCTGTTTT-CCTGTTGATTTATCTT 29508
Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746
|| ||||||||||| || || || |||| ||| || | || | |||||| ||
Sbjct 29507 GTGCGGAAACATTCAAAATTCCGTTCGCGTCAATATCAAAAGTAACTTCAATTTGCGGCA 29448
Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806
||| | || || | |||||| || | || || ||| ||||||| | | | || ||
Sbjct 29447 CACCACGAGGAGCAGGTGGAATTCCAGACAACTCGAATTTACCAAGCAGATTATTGTCTT 29388
Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATT 6841
||| | | |||||||||||| || || | ||||
Sbjct 29387 TCGTCATAGCACGTTCACCTTCGTAAACCTAAATT 29353
Score = 105 bits (116), Expect = 8e-18
Identities = 112/145 (77%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653
|| ||||| ||||| ||||| ||||| || || ||||| || || || || ||||| |||
Sbjct 22796 TTTTTATCTAGACCATACGCAATAGCAGCAGCAGTTGGCTCGTTGATGATTCGAAGGACA 22737
Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713
|||| ||||| || | |||||||||| || ||||||||||| |||||||| || ||
Sbjct 22736 -TTCAAGCCAGATATTGCACCCGCATCTTTGGTTGCTTGTCGTTGAGAATCGTTGAAATA 22678
Query 7714 GGCCGGGACCGTTACGACCGCGTCC 7738
|| || || ||||| || || |||
Sbjct 22677 CGCTGGCACAGTTACTACGGCATCC 22653
Score = 102 bits (112), Expect = 1e-16
Identities = 238/353 (67%), Gaps = 12/353 (3%)
Strand=Plus/Minus
Query 6496 TTCGACCGTTCCTTTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGC--CT---C 6549
||||| |||| ||||| |||| | | ||| ||| | | |||| ||||| || |
Sbjct 24602 TTCGATCGTTTGCTTCATGTTGAAAGC-GTATGATTCTAAAGCATTTTTCGCTGCTATGC 24544
Query 6550 GACCTTTTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTT 6609
|| |||||| ||| | ||||| ||| | || |||||||| || || | ||||| |
Sbjct 24543 GATCTTTTT-GCGCA----TCATCATCAGCCTTGTACTTTTCGGCTTCCTCAACCATTCT 24489
Query 6610 TTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTT 6669
||| || || || ||||| || | || |||||||| ||||| |||||||| | | ||
Sbjct 24488 TTCGATTTCATCCTTCGACAAACGTCCTTTATCATTGGTAATTGTAATCTTATTGTGCTT 24429
Query 6670 ACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCT 6729
|| | || ||||| | ||| ||||| | |||||| |||||||| | ||| || |
Sbjct 24428 GCCAGTGGATTTATCCTGTGCAGAGACATTTAGAATACCGTTTGCATCGATATCAAAAGT 24369
Query 6730 TACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACC 6789
|| | |||||||| ||| | || || | ||||| || | | || ||| | ||
Sbjct 24368 GACTTCGATTTGTGGCACACCACGAGGAGCAGGCGGAATTCCAGAAAGTTCGAATTTGCC 24309
Query 6790 AAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTG 6842
| | |||| || | | | || |||||||||||| || || | || ||
Sbjct 24308 CAACAGGTTGTTGTCTCTTGTCATCGCACGTTCACCTTCGTAAACCTGAAATG 24256
>seq3634
Length=4594
Score = 109 bits (120), Expect = 7e-19
Identities = 120/160 (75%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 184231 TTTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAAT 184290
|||||| | ||| ||||| ||||| || | ||||| ||||||||| |||||| | ||
Sbjct 713 TTTACCTCGAAGAGGAAATACACCATACTTGTCACGTCCAACAACTCCAAGACCTGAAAC 654
Query 184291 TGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGTGT 184350
|| | || ||| || ||||||||||| |||| |||||| ||||| | |||| | |
Sbjct 653 AGCCAATGATTTGGCTGAATCACCTTCCGTAAGAATAAGCGTACATTGTGCAGAATTCTT 594
Query 184351 GGTACCGGCTTTATTGGCATCGTCGAGTTTTGGAATACCC 184390
||||| || | ||| ||||| || |||||||| | ||||
Sbjct 593 CGTACCAGCATCATTAGCATCTTCCAGTTTTGGCACACCC 554
>seq4215
Length=4125
Score = 82.4 bits (90), Expect = 1e-10
Identities = 136/194 (70%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 22343 TATCATTTAAAATGCCTATATATACATCGGAAGTTGATGGTATAGGTGTGTTGAAAATTC 22402
|||| ||| | |||| ||||||| | |||||||||| ||| || ||| | |
Sbjct 4062 TATCTTTTGACTTGCCAGAATATACAGCTGAAGTTGATGCTATTGGAACATTGCGTTTGC 4003
Query 22403 TAGAAGCGATCCGTTTAGCAGGTCTAACAAAAACGTGTAAA-TTTTATCAGGCATCTACA 22461
| || | || | | | ||| |||| || | | ||||| |||||||| || || |||
Sbjct 4002 TGGATTCCATTCATGCATGTGGTTTAACTAATA-GAGTAAAATTTTATCAAGCTTCAACA 3944
Query 22462 TCAGAGCTCTACGGTAAAGTAAATGAAACTCCACAAAATGAAAATACACCGTTTTACCCG 22521
|| || | ||||| |||||| | ||| || ||||| |||| |||||| || || ||
Sbjct 3943 TCTGAATTGTACGGCAAAGTACAAGAAGTGCCTCAAAAAGAAACTACACCCTTCTATCCT 3884
Query 22522 CGTTCACCATATGG 22535
|||||||| |||||
Sbjct 3883 CGTTCACCTTATGG 3870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634771790516480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |