Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq13328 123 6e-23
seq2700 109 1e-18
seq21486 104 5e-17
seq39641 89.7 1e-12
>seq13328
Length=1679
Score = 123 bits (136), Expect = 6e-23
Identities = 113/143 (79%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|||||||| || ||||||||||| || || || || || ||||| || || ||||||||
Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| || ||||||||||| || || ||| || |||||||||| |||||| || |||
Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTACCAGTC 70
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
|| ||||| ||||| | ||||||
Sbjct 69 AATGTTTTCACGAATATTTGCAT 47
>seq2700
Length=5623
Score = 109 bits (120), Expect = 1e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|||||||| || || | ||| || || |||||||| |||||||||||||| ||||| ||
Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| || || ||||| || ||||| ||| || ||||| || | |||||| || ||
Sbjct 604 GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGTT 663
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
||||| |||||||| | ||||||
Sbjct 664 AAAGTCTTTACGAAAATTTGCAT 686
>seq21486
Length=1089
Score = 104 bits (114), Expect = 5e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055
|| |||| ||||| ||||| || || || ||||| ||||| ||||||||||||||||| |
Sbjct 895 GCATACCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCT 954
Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115
| ||| || || || || || || || ||| ||||| || || | || || ||||
Sbjct 955 TGGCCTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTG 1014
Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140
|||| |||||||| || | ||||||
Sbjct 1015 TCAACGTTTTTACAAAGATTTGCAT 1039
>seq39641
Length=587
Score = 89.7 bits (98), Expect = 1e-12
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| |||||||| | ||| ||||| || || ||||| ||||||||||| || |||||
Sbjct 328 TACCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCG 269
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|| || ||||| || || || || ||| ||||| | || | ||| || || || |
Sbjct 268 CTTTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAA 209
Query 195119 AAGTTTTTACGAACACTTGCAT 195140
||||||||| || | ||||||
Sbjct 208 GAGTTTTTACAAAAATTTGCAT 187
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1108835204925024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |