Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq32903 95.1 1e-14 seq3467 82.4 9e-11 >seq32903 Length=715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 48483 CCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCT 48542 || ||||||||||| |||| || || | ||||| | ||| | || || | || ||| Sbjct 201 CCAATACCACCTGCATTTTTTGAAATCATTGCACATCTTTTCAACGTTTCGAATATGCCT 260 Query 48543 TCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTT 48602 || || ||||| || | ||| | || || ||||| | |||||| || | |||||| Sbjct 261 TCAATGCTATCTTCAAACATTGTCAACAGGAAACATGAACTCATTTGTGGTTTACAAGTG 320 Query 48603 CCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATAT 48662 || | |||||| | |||||| | |||||| ||||||||| | || || | ||| || || Sbjct 321 CCAGCATTAAAAAGTGTTGGTGTTGCATGTATAAACCATCTTTCGGACATCAAATTGTAA 380 Query 48663 GT 48664 || Sbjct 381 GT 382 >seq3467 Length=4753 Score = 82.4 bits (90), Expect = 9e-11 Identities = 168/243 (69%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 48114 GTATATAACTTCTCAAAT-TCATCCCCATACACATTATCTAACCCAGGACATTCATTAGG 48172 || || || ||||||||| || | ||| | || || ||||| ||||||||| ||| Sbjct 4448 GTGTACAATTTCTCAAATGTCTTGCCCCAGGA-ATCTTCCAACCCGGGACATTCAGCAGG 4390 Query 48173 ACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA 48232 |||||| |||||||| | ||| | ||| | ||| || | ||| |||||||| Sbjct 4389 ACACATTAATGACCATATTTTATCGTCACGTACGCGCTCCATGAAAAGATCCGGTATCCA 4330 Query 48233 AAGAGCTATAAATAAATCCCTA----GTTCTTAGTTCTTCATTGCCACTATTCCTTTTAA 48288 | | | | |||||||| | | |||| ||||| ||| |||| |||| | | | Sbjct 4329 TAAACCAAAGAATAAATCACGACAACGTTCC-AGTTCATCAC--CCAC-ATTCTTCCTCA 4274 Query 48289 GTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTG 48348 |||| ||||| || | ||||| |||||||||||||| || || | || | | | |||| Sbjct 4273 GTTCTAGAAATTCAAAAATATCCGCATGCCATGGTTCCAAGTAAACGGCAAATGCGCCTG 4214 Query 48349 GTC 48351 ||| Sbjct 4213 GTC 4211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561789297358080