Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq32903 95.1 1e-14
seq3467 82.4 9e-11
>seq32903
Length=715
Score = 95.1 bits (104), Expect = 1e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 48483 CCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCT 48542
|| ||||||||||| |||| || || | ||||| | ||| | || || | || |||
Sbjct 201 CCAATACCACCTGCATTTTTTGAAATCATTGCACATCTTTTCAACGTTTCGAATATGCCT 260
Query 48543 TCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTT 48602
|| || ||||| || | ||| | || || ||||| | |||||| || | ||||||
Sbjct 261 TCAATGCTATCTTCAAACATTGTCAACAGGAAACATGAACTCATTTGTGGTTTACAAGTG 320
Query 48603 CCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATAT 48662
|| | |||||| | |||||| | |||||| ||||||||| | || || | ||| || ||
Sbjct 321 CCAGCATTAAAAAGTGTTGGTGTTGCATGTATAAACCATCTTTCGGACATCAAATTGTAA 380
Query 48663 GT 48664
||
Sbjct 381 GT 382
>seq3467
Length=4753
Score = 82.4 bits (90), Expect = 9e-11
Identities = 168/243 (69%), Gaps = 10/243 (4%)
Strand=Plus/Minus
Query 48114 GTATATAACTTCTCAAAT-TCATCCCCATACACATTATCTAACCCAGGACATTCATTAGG 48172
|| || || ||||||||| || | ||| | || || ||||| ||||||||| |||
Sbjct 4448 GTGTACAATTTCTCAAATGTCTTGCCCCAGGA-ATCTTCCAACCCGGGACATTCAGCAGG 4390
Query 48173 ACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA 48232
|||||| |||||||| | ||| | ||| | ||| || | ||| ||||||||
Sbjct 4389 ACACATTAATGACCATATTTTATCGTCACGTACGCGCTCCATGAAAAGATCCGGTATCCA 4330
Query 48233 AAGAGCTATAAATAAATCCCTA----GTTCTTAGTTCTTCATTGCCACTATTCCTTTTAA 48288
| | | | |||||||| | | |||| ||||| ||| |||| |||| | | |
Sbjct 4329 TAAACCAAAGAATAAATCACGACAACGTTCC-AGTTCATCAC--CCAC-ATTCTTCCTCA 4274
Query 48289 GTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTG 48348
|||| ||||| || | ||||| |||||||||||||| || || | || | | | ||||
Sbjct 4273 GTTCTAGAAATTCAAAAATATCCGCATGCCATGGTTCCAAGTAAACGGCAAATGCGCCTG 4214
Query 48349 GTC 48351
|||
Sbjct 4213 GTC 4211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561789297358080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |