Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq3 152 4e-31
seq4886 145 6e-29
seq13328 95.1 1e-13
seq21486 91.5 1e-12
seq39641 87.8 1e-11
seq2700 86.0 5e-11
>seq3
Length=46552
Score = 152 bits (168), Expect = 4e-31
Identities = 251/358 (70%), Gaps = 7/358 (2%)
Strand=Plus/Plus
Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234
|||| ||||| ||||| || ||||| | | ||| ||||| | || || |||||
Sbjct 27673 ATTTCAGATGCGAAACGATTGATTGGTCGTAAATTTGATGATGGATCAGTACAATCAGAT 27732
Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAAGCT 550291
||||| |||||||| ||| || || | |||| | ||| ||||| | | || || |
Sbjct 27733 ATGAAACATTGGCCATTCAAAGTTATAAATGCTGGTGGCGGTAAACCAAA-AGTGCAGGT 27791
Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCAC--CAGAACAAATTTCATCTATGGTTTTAA 550349
|||| | || || ||||| ||||| |||||||||| ||||||||
Sbjct 27792 TGAATACAAGGGCGAGACGAA-AACCTTCACTCCAGAAGAAATTTCATCAATGGTTTTGG 27850
Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409
| |||||||| |||| || || ||| ||||||| | || | |||||| || || |
Sbjct 27851 TTAAAATGAAGGAAACTGCTGAAGCATTTCTTGGTCATGCGGTCAAGGATGCCGTCATCA 27910
Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469
| || || || ||||| ||||||||||| || ||||| || |||||| | || ||||
Sbjct 27911 CAGTCCCTGCGTATTTCAATGACTCACAGCGACAAGCAACGAAAGATTCCGGTGCAATTG 27970
Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
|||| || ||||| | || |||||||||||||| || || || || |||| |||||
Sbjct 27971 CTGGTCTGAATGTCTTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGG 28028
Score = 113 bits (124), Expect = 4e-19
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455
|||||| ||| ||||||| ||||| ||||| || || || ||||| ||||| || |||||
Sbjct 22653 GGATGCCGTAGTAACTGTGCCAGCGTATTTCAACGATTCTCAACGACAAGCAACCAAAGA 22712
Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515
||| || || |||| | ||||| ||||| || ||||| || || |||||||||||
Sbjct 22713 TGCGGGTGCAATATCTGGCTTGAATGTCCTTCGAATCATCAACGAGCCAACTGCTGCTGC 22772
Query 550516 ACTTGCATATGGACTTGATAAA 550537
|||| ||||| || ||||||
Sbjct 22773 TATTGCGTATGGTCTAGATAAA 22794
Score = 111 bits (122), Expect = 1e-18
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527
|| ||||| ||||||| ||||||| || | || || ||||| ||||||||||||
Sbjct 29384 ACGAAAGACAATAATCTGCTTGGTAAATTCGAGTTGTCTGGAATTCCACCTGCTCCTCGT 29443
Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587
|| || |||||||||||||||||||| ||||| || || || |||||||||||||| |
Sbjct 29444 GGTGTGCCGCAAATTGAAGTTACTTTTGATATTGACGCGAACGGAATTTTGAATGTTTCC 29503
Query 552588 GCTTGTGATAAATC 552601
|| ||||||||
Sbjct 29504 GCACAAGATAAATC 29517
Score = 86.0 bits (94), Expect = 5e-11
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|| ||||| |||||||||||||| || || ||||| ||||| ||||| |||||||||||
Sbjct 24327 GGAATTCCGCCTGCTCCTCGTGGTGTGCCACAAATCGAAGTCACTTTTGATATCGATGCA 24386
Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601
|| || ||| | ||||| |||| ||||||||
Sbjct 24387 AACGGTATTCTAAATGTCTCTGCACAGGATAAATC 24421
>seq4886
Length=3728
Score = 145 bits (160), Expect = 6e-29
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381
|| ||| |||||||| | |||||| | ||||||||| ||| || || | | ||
Sbjct 2404 CCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAATTGCGGAAGCATATCTT 2345
Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441
|| ||||||| | ||||||| | || ||||| || || |||||||| |||||||
Sbjct 2344 GGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTTTAATGATGCACAACGC 2285
Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501
||||| ||||||||||| || |||||| || || |||||| | ||||| |||||||||
Sbjct 2284 CAAGCCACTAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTCCGTATCATCAATGAA 2225
Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
|| || ||||| || |||| ||||| || |||||
Sbjct 2224 CCAACAGCTGCCGCTATTGCTTATGGGCTGGATAA 2190
Score = 102 bits (112), Expect = 7e-16
Identities = 166/238 (70%), Gaps = 16/238 (7%)
Strand=Plus/Minus
Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269
||||||||||| ||||| || |||||||| ||| | ||||| | | || |||| ||
Sbjct 1163 AATCCAGATGAAGCTGTAGCATATGGTGCAGCAGTCCAAGCTGGTGTTATTTCGGG---- 1108
Query 552270 ACTGATGAAAA-ACT----ACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTG 552324
||| |||| ||| ||| | |||| | ||||||| | |||| | ||||||
Sbjct 1107 --TGAAGAAAGCACTGGTGACATAGTATTAT-----TAGATGTGAATCCTTTGACTCTTG 1055
Query 552325 GTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTT 552384
|| | ||||||||||| ||| ||||||| || ||||| | || || ||| ||| |||
Sbjct 1054 GTATTGAAACAGTTGGTGGTGTTATGACCAAACTTATTCAAAGGAACACTGTTATCCCTA 995
Query 552385 GTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442
|| ||| || | ||||||||| | |||||||| | | ||||| |||||
Sbjct 994 CCAAGAAAAGTCAAATCTTTTCTACGGCAGCTGATAATCAGCCAACAGTTACCATTCA 937
Score = 95.1 bits (104), Expect = 1e-13
Identities = 105/139 (76%), Gaps = 1/139 (1%)
Strand=Plus/Plus
Query 361703 AGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCC 361762
|| |||||||| | | |||||||||||||| || || || | ||||||||| ||
Sbjct 2196 AGCCCATAAGCAATAGCGGCAGCTGTTGGTTCATTGATGATACGGACAACATTGAGGCCG 2255
Query 361763 GCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACA 361822
|| || | ||||||| ||||||||| ||||||||||||||||| || ||||| ||
Sbjct 2256 GCAATAGTACCTGCATCTTTAGTGGCTTGGCGTTGTGCATCATTAAAGTAAGCAGGTACT 2315
Query 361823 GTAATCACTGC-TTTTTCA 361840
|| | ||||| | |||||
Sbjct 2316 GTGACAACTGCATGTTTCA 2334
Score = 95.1 bits (104), Expect = 1e-13
Identities = 164/237 (69%), Gaps = 6/237 (3%)
Strand=Plus/Minus
Query 550022 AGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAAC 550081
|||||||||||||||| ||||||| ||| ||||| ||||||||||| ||||||||
Sbjct 2801 AGTTGTGTTGGTGTTTATAAAAATGGACGAGTGGAAATCATTGCCAATGAACAAGGTAAT 2742
Query 550082 AGAACTACTCCATCTTATGTTTCTTTCAC-GGAAA-----CTGAACATTTAGTTGGTGAT 550135
|| | || || ||||| || | ||||| || | ||| | | | |||| ||
Sbjct 2741 AGGATCACGCCGTCTTACGTAGCATTCACTGGTGATGGCGGTGAGCGTCTTATTGGCGAC 2682
Query 550136 GCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTA 550195
||||| ||| | || || ||||| ||||| | || |||| || || ||
Sbjct 2681 GCAGCCAAAAACCAGTTGACAACAAATCCGGAAAATACAGTCTTCGATGTCAAGCGCTTG 2622
Query 550196 ATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252
||||| || | || ||||||||||| || |||||| || ||||||||||||
Sbjct 2621 ATTGGGCGAGAATACAAAGATTCGACTGTACAACAAGATATCAAACATTGGCCTTTC 2565
>seq13328
Length=1679
Score = 95.1 bits (104), Expect = 1e-13
Identities = 109/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || ||||||||||||| |||||||||||| || || ||||| ||||| ||||||||
Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130
Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450
|| || |||||| ||||||| | ||| || || |||| || ||||||||
Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTAC-CTCAAGGGTAATCGTCTTACCAGT 71
Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474
| ||||| ||||| ||||||||
Sbjct 70 CAATGTTTTCACGAATATTTGCAT 47
>seq21486
Length=1089
Score = 91.5 bits (100), Expect = 1e-12
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
||||| || || || ||||| || ||| || ||||| || || | || || |
Sbjct 159 AGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGA 218
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
||| || ||||||||||||||||| || | || || ||||| || ||||| || ||
Sbjct 219 CCATCCTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCC 278
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435
|| || ||||| ||| ||| || || || ||||| | | | || ||| | ||
Sbjct 279 TTGTCCTGAATCTTTGCTTTAACGTTTTCGATGGTATCCG-AAGCCTCCACTTCCAACGT 337
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| |||||||| || | |||||||||||||||||||||
Sbjct 338 TATGGTTTTACCCGTTAAAGTTTTAACGAAAATTTGCAT 376
Score = 89.7 bits (98), Expect = 4e-12
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| ||||||||||| | |||||||||||||| || || |||||||| |||||||| |
Sbjct 584 CCTGCAAAAATAAGACGCTGCTGATCAGGAGGGATGCCCTCTTTATCCTGAATTTTGGCT 643
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||| || ||||| | | ||| ||| || || | ||||| ||||||||
Sbjct 644 TTCACATTCTCGATCGTATCCGAAGCTTCTAC-TTCCAGCGTTATGGTTTTGCCAGTAAG 702
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
|| || |||||||| |||||
Sbjct 703 CGTCTTTACGAAAATCTGCAT 723
>seq39641
Length=587
Score = 87.8 bits (96), Expect = 1e-11
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| || || || | || || ||||| || |||||||||||||| || || ||||| |
Sbjct 326 CCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 267
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||| || ||||||| || ||| ||| | || | ||||||||||||||
Sbjct 266 TTCACATTCTCGATAGTATCAGATGCTTCTAC-TTCCAATGTGATCGTTTTACCAGTAAG 208
Query 563454 AGTTTTAACGAAAATTTGCATA 563475
|||||| || ||||||||||||
Sbjct 207 AGTTTTTACAAAAATTTGCATA 186
>seq2700
Length=5623
Score = 86.0 bits (94), Expect = 5e-11
Identities = 108/146 (74%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || |||||||| | || |||||||| ||||| || |||||||| || ||||| ||
Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603
Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAGAGTAACAGTTTTACCAGT 563450
|||||| ||||| ||||| | | || | | || || || | || ||||||||
Sbjct 604 GCTTTTACATTTTCAATCGTATCCGAG-GATTCGACCTCAAGTGTGATCGTCTTACCAGT 662
Query 563451 AAGAGTTTTAACGAAAATTTGCATAG 563476
| ||| || ||||||||||||||||
Sbjct 663 TAAAGTCTTTACGAAAATTTGCATAG 688
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4026891235561280
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