Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3 152 4e-31 seq4886 145 6e-29 seq13328 95.1 1e-13 seq21486 91.5 1e-12 seq39641 87.8 1e-11 seq2700 86.0 5e-11 >seq3 Length=46552 Score = 152 bits (168), Expect = 4e-31 Identities = 251/358 (70%), Gaps = 7/358 (2%) Strand=Plus/Plus Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 |||| ||||| ||||| || ||||| | | ||| ||||| | || || ||||| Sbjct 27673 ATTTCAGATGCGAAACGATTGATTGGTCGTAAATTTGATGATGGATCAGTACAATCAGAT 27732 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAAGCT 550291 ||||| |||||||| ||| || || | |||| | ||| ||||| | | || || | Sbjct 27733 ATGAAACATTGGCCATTCAAAGTTATAAATGCTGGTGGCGGTAAACCAAA-AGTGCAGGT 27791 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCAC--CAGAACAAATTTCATCTATGGTTTTAA 550349 |||| | || || ||||| ||||| |||||||||| |||||||| Sbjct 27792 TGAATACAAGGGCGAGACGAA-AACCTTCACTCCAGAAGAAATTTCATCAATGGTTTTGG 27850 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 | |||||||| |||| || || ||| ||||||| | || | |||||| || || | Sbjct 27851 TTAAAATGAAGGAAACTGCTGAAGCATTTCTTGGTCATGCGGTCAAGGATGCCGTCATCA 27910 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || || || ||||| ||||||||||| || ||||| || |||||| | || |||| Sbjct 27911 CAGTCCCTGCGTATTTCAATGACTCACAGCGACAAGCAACGAAAGATTCCGGTGCAATTG 27970 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||| || ||||| | || |||||||||||||| || || || || |||| ||||| Sbjct 27971 CTGGTCTGAATGTCTTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGG 28028 Score = 113 bits (124), Expect = 4e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| ||| ||||||| ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 22653 GGATGCCGTAGTAACTGTGCCAGCGTATTTCAACGATTCTCAACGACAAGCAACCAAAGA 22712 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| || || |||| | ||||| ||||| || ||||| || || ||||||||||| Sbjct 22713 TGCGGGTGCAATATCTGGCTTGAATGTCCTTCGAATCATCAACGAGCCAACTGCTGCTGC 22772 Query 550516 ACTTGCATATGGACTTGATAAA 550537 |||| ||||| || |||||| Sbjct 22773 TATTGCGTATGGTCTAGATAAA 22794 Score = 111 bits (122), Expect = 1e-18 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 552468 ACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGT 552527 || ||||| ||||||| ||||||| || | || || ||||| |||||||||||| Sbjct 29384 ACGAAAGACAATAATCTGCTTGGTAAATTCGAGTTGTCTGGAATTCCACCTGCTCCTCGT 29443 Query 552528 GGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACT 552587 || || |||||||||||||||||||| ||||| || || || |||||||||||||| | Sbjct 29444 GGTGTGCCGCAAATTGAAGTTACTTTTGATATTGACGCGAACGGAATTTTGAATGTTTCC 29503 Query 552588 GCTTGTGATAAATC 552601 || |||||||| Sbjct 29504 GCACAAGATAAATC 29517 Score = 86.0 bits (94), Expect = 5e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || ||||| |||||||||||||| || || ||||| ||||| ||||| ||||||||||| Sbjct 24327 GGAATTCCGCCTGCTCCTCGTGGTGTGCCACAAATCGAAGTCACTTTTGATATCGATGCA 24386 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 || || ||| | ||||| |||| |||||||| Sbjct 24387 AACGGTATTCTAAATGTCTCTGCACAGGATAAATC 24421 >seq4886 Length=3728 Score = 145 bits (160), Expect = 6e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 || ||| |||||||| | |||||| | ||||||||| ||| || || | | || Sbjct 2404 CCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAATTGCGGAAGCATATCTT 2345 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || ||||||| | ||||||| | || ||||| || || |||||||| ||||||| Sbjct 2344 GGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTTTAATGATGCACAACGC 2285 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 ||||| ||||||||||| || |||||| || || |||||| | ||||| ||||||||| Sbjct 2284 CAAGCCACTAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTCCGTATCATCAATGAA 2225 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || || ||||| || |||| ||||| || ||||| Sbjct 2224 CCAACAGCTGCCGCTATTGCTTATGGGCTGGATAA 2190 Score = 102 bits (112), Expect = 7e-16 Identities = 166/238 (70%), Gaps = 16/238 (7%) Strand=Plus/Minus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 ||||||||||| ||||| || |||||||| ||| | ||||| | | || |||| || Sbjct 1163 AATCCAGATGAAGCTGTAGCATATGGTGCAGCAGTCCAAGCTGGTGTTATTTCGGG---- 1108 Query 552270 ACTGATGAAAA-ACT----ACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTG 552324 ||| |||| ||| ||| | |||| | ||||||| | |||| | |||||| Sbjct 1107 --TGAAGAAAGCACTGGTGACATAGTATTAT-----TAGATGTGAATCCTTTGACTCTTG 1055 Query 552325 GTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTT 552384 || | ||||||||||| ||| ||||||| || ||||| | || || ||| ||| ||| Sbjct 1054 GTATTGAAACAGTTGGTGGTGTTATGACCAAACTTATTCAAAGGAACACTGTTATCCCTA 995 Query 552385 GTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442 || ||| || | ||||||||| | |||||||| | | ||||| ||||| Sbjct 994 CCAAGAAAAGTCAAATCTTTTCTACGGCAGCTGATAATCAGCCAACAGTTACCATTCA 937 Score = 95.1 bits (104), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 361703 AGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCC 361762 || |||||||| | | |||||||||||||| || || || | ||||||||| || Sbjct 2196 AGCCCATAAGCAATAGCGGCAGCTGTTGGTTCATTGATGATACGGACAACATTGAGGCCG 2255 Query 361763 GCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACA 361822 || || | ||||||| ||||||||| ||||||||||||||||| || ||||| || Sbjct 2256 GCAATAGTACCTGCATCTTTAGTGGCTTGGCGTTGTGCATCATTAAAGTAAGCAGGTACT 2315 Query 361823 GTAATCACTGC-TTTTTCA 361840 || | ||||| | ||||| Sbjct 2316 GTGACAACTGCATGTTTCA 2334 Score = 95.1 bits (104), Expect = 1e-13 Identities = 164/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 550022 AGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAAC 550081 |||||||||||||||| ||||||| ||| ||||| ||||||||||| |||||||| Sbjct 2801 AGTTGTGTTGGTGTTTATAAAAATGGACGAGTGGAAATCATTGCCAATGAACAAGGTAAT 2742 Query 550082 AGAACTACTCCATCTTATGTTTCTTTCAC-GGAAA-----CTGAACATTTAGTTGGTGAT 550135 || | || || ||||| || | ||||| || | ||| | | | |||| || Sbjct 2741 AGGATCACGCCGTCTTACGTAGCATTCACTGGTGATGGCGGTGAGCGTCTTATTGGCGAC 2682 Query 550136 GCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTA 550195 ||||| ||| | || || ||||| ||||| | || |||| || || || Sbjct 2681 GCAGCCAAAAACCAGTTGACAACAAATCCGGAAAATACAGTCTTCGATGTCAAGCGCTTG 2622 Query 550196 ATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 ||||| || | || ||||||||||| || |||||| || |||||||||||| Sbjct 2621 ATTGGGCGAGAATACAAAGATTCGACTGTACAACAAGATATCAAACATTGGCCTTTC 2565 >seq13328 Length=1679 Score = 95.1 bits (104), Expect = 1e-13 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||||||||||| |||||||||||| || || ||||| ||||| |||||||| Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 || || |||||| ||||||| | ||| || || |||| || |||||||| Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTAC-CTCAAGGGTAATCGTCTTACCAGT 71 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 | ||||| ||||| |||||||| Sbjct 70 CAATGTTTTCACGAATATTTGCAT 47 >seq21486 Length=1089 Score = 91.5 bits (100), Expect = 1e-12 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || || ||||| || ||| || ||||| || || | || || | Sbjct 159 AGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGA 218 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || ||||||||||||||||| || | || || ||||| || ||||| || || Sbjct 219 CCATCCTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCC 278 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || || ||||| ||| ||| || || || ||||| | | | || ||| | || Sbjct 279 TTGTCCTGAATCTTTGCTTTAACGTTTTCGATGGTATCCG-AAGCCTCCACTTCCAACGT 337 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||||||| || | ||||||||||||||||||||| Sbjct 338 TATGGTTTTACCCGTTAAAGTTTTAACGAAAATTTGCAT 376 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||||||||| | |||||||||||||| || || |||||||| |||||||| | Sbjct 584 CCTGCAAAAATAAGACGCTGCTGATCAGGAGGGATGCCCTCTTTATCCTGAATTTTGGCT 643 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||| || ||||| | | ||| ||| || || | ||||| |||||||| Sbjct 644 TTCACATTCTCGATCGTATCCGAAGCTTCTAC-TTCCAGCGTTATGGTTTTGCCAGTAAG 702 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || || |||||||| ||||| Sbjct 703 CGTCTTTACGAAAATCTGCAT 723 >seq39641 Length=587 Score = 87.8 bits (96), Expect = 1e-11 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || || || || | || || ||||| || |||||||||||||| || || ||||| | Sbjct 326 CCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 267 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||| || ||||||| || ||| ||| | || | |||||||||||||| Sbjct 266 TTCACATTCTCGATAGTATCAGATGCTTCTAC-TTCCAATGTGATCGTTTTACCAGTAAG 208 Query 563454 AGTTTTAACGAAAATTTGCATA 563475 |||||| || |||||||||||| Sbjct 207 AGTTTTTACAAAAATTTGCATA 186 >seq2700 Length=5623 Score = 86.0 bits (94), Expect = 5e-11 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || |||||||| | || |||||||| ||||| || |||||||| || ||||| || Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAGAGTAACAGTTTTACCAGT 563450 |||||| ||||| ||||| | | || | | || || || | || |||||||| Sbjct 604 GCTTTTACATTTTCAATCGTATCCGAG-GATTCGACCTCAAGTGTGATCGTCTTACCAGT 662 Query 563451 AAGAGTTTTAACGAAAATTTGCATAG 563476 | ||| || |||||||||||||||| Sbjct 663 TAAAGTCTTTACGAAAATTTGCATAG 688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026891235561280