Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq21486 122 7e-23
seq2700 122 7e-23
seq39641 113 4e-20
seq5858 107 2e-18
seq9851 98.7 8e-16
seq13328 91.5 1e-13
seq27013 86.0 5e-12
>seq21486
Length=1089
Score = 122 bits (134), Expect = 7e-23
Identities = 114/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384
|| |||| || || || | |||||| ||||| |||||||| |||||||| |||||||| |
Sbjct 895 GCATACCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCT 954
Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444
| |||||| |||| | || ||||| | ||| ||||| ||||||| |||||||| |
Sbjct 955 TGGCCTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTG 1014
Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469
| || ||||||||||| || |||||
Sbjct 1015 TCAACGTTTTTACAAAGATTTGCAT 1039
Score = 120 bits (132), Expect = 2e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313
||| | ||| | ||||| || ||||| || || ||||| || || | | || | |
Sbjct 161 ACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGACC 220
Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373
||| |||| ||| || || ||||| ||||| ||||||||||| || |||||||| || ||
Sbjct 221 ATCCTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTT 280
Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433
|| ||||| ||| ||| || |||| | || || || | |||||||| | || |
Sbjct 281 GTCCTGAATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTAT 340
Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| || ||||||||||| || || || |||||
Sbjct 341 GGTTTTACCCGTTAAAGTTTTAACGAAAATTTGCAT 376
>seq2700
Length=5623
Score = 122 bits (134), Expect = 7e-23
Identities = 115/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||||||||| ||||| ||||| ||||| || || ||||||||||| || ||||| ||
Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||||||| |||| | || || || | ||| || ||||| |||| ||| || || |||
Sbjct 604 GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGTT 663
Query 101447 AAAGTTTTTACAAATATCTGCATGGTT 101473
||||| ||||| || || ||||| |||
Sbjct 664 AAAGTCTTTACGAAAATTTGCATAGTT 690
>seq39641
Length=587
Score = 113 bits (124), Expect = 4e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| || || ||||| ||||||||||| || ||||| |||||||| || || |||||
Sbjct 328 TACCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCG 269
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||| ||| | || | ||| ||||| | ||| ||||| | |||| |||||| || || |
Sbjct 268 CTTTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAA 209
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
|||||||||||| || |||||
Sbjct 208 GAGTTTTTACAAAAATTTGCAT 187
>seq5858
Length=3261
Score = 107 bits (118), Expect = 2e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383
|| ||||| |||| || | ||| || ||||| ||||| |||||||| ||||||||
Sbjct 2969 TGTTTACCATCAAAAATAAGACGTTGCTGATCTAATGGAATTCCTTCTTTTTCTTGAATC 2910
Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443
| | ||||||||||| | || ||||| ||||| ||||| | ||||| ||||||||
Sbjct 2909 CTGTCCTTTACAATTTCGATTGTATCAGAAGTTTCAACTTCTAAAGTGATTGTTTTGCCC 2850
Query 101444 GTTAAAGTTTTTACAAATATCTGCATG 101470
| || ||||||||||| || ||||||
Sbjct 2849 TTCAACGTTTTTACAAAAATTTGCATG 2823
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| ||||| ||||| ||||| || | ||| || || ||||| || ||||||
Sbjct 2558 TACCAGCAAAAATCAAGCGCTGCTGATCCGGTGAAATACCCTCCTTATCCTGTATTTTTG 2499
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||| ||| | || | ||||| |||| |||||||||||| | | | |||| || |
Sbjct 2498 CTTTAACATTCTCAATCGTGTCTGACGCCTCCACTTCAAGAATAATCTTTTTCCCTAGCA 2439
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
| |||||||| || || |||||
Sbjct 2438 ATGTTTTTACGAAGATTTGCAT 2417
>seq9851
Length=2160
Score = 98.7 bits (108), Expect = 8e-16
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| || || ||||| ||||||||||| || ||||| || ||||| || || |||||
Sbjct 1331 TACCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCG 1390
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
|| ||| | || | || ||||| | ||| ||||| | |||| |||||| || || |
Sbjct 1391 CCTTAACATTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAA 1450
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
|||||||||||| || |||||
Sbjct 1451 GAGTTTTTACAAAGATTTGCAT 1472
>seq13328
Length=1679
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||||||||| || | || || ||||| || || || ||||| ||||| ||||||||
Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | || ||||||| ||| || ||||| || | ||| || || ||
Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTACCAGTC 70
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
|| ||||| || ||||| |||||
Sbjct 69 AATGTTTTCACGAATATTTGCAT 47
>seq27013
Length=870
Score = 86.0 bits (94), Expect = 5e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| | | |||||||| || |||| ||| || || ||||| || || ||
Sbjct 98 TACCAGCAAAAACTAGGCGCTGTTGTTCCGGCGAAATACCCTCCTTATCCTGTATCTTCG 157
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
||| ||| | || || ||||| |||| |||||||||||| ||| ||| | || || |
Sbjct 158 CTTTAACATTCTCAACCGTGTCTGACGCTTCCACTTCAAGGATGATTGTTCTTCCAGTCA 217
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
| || ||||| || || |||||
Sbjct 218 ATGTCTTTACGAAGATTTGCAT 239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396058786473504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |