Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq21486 122 7e-23 seq2700 122 7e-23 seq39641 113 4e-20 seq5858 107 2e-18 seq9851 98.7 8e-16 seq13328 91.5 1e-13 seq27013 86.0 5e-12 >seq21486 Length=1089 Score = 122 bits (134), Expect = 7e-23 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 || |||| || || || | |||||| ||||| |||||||| |||||||| |||||||| | Sbjct 895 GCATACCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCT 954 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | |||||| |||| | || ||||| | ||| ||||| ||||||| |||||||| | Sbjct 955 TGGCCTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTG 1014 Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469 | || ||||||||||| || ||||| Sbjct 1015 TCAACGTTTTTACAAAGATTTGCAT 1039 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||||| || ||||| || || ||||| || || | | || | | Sbjct 161 ACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGACC 220 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| ||| || || ||||| ||||| ||||||||||| || |||||||| || || Sbjct 221 ATCCTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTT 280 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || ||||| ||| ||| || |||| | || || || | |||||||| | || | Sbjct 281 GTCCTGAATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTAT 340 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || ||||||||||| || || || ||||| Sbjct 341 GGTTTTACCCGTTAAAGTTTTAACGAAAATTTGCAT 376 >seq2700 Length=5623 Score = 122 bits (134), Expect = 7e-23 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||||||||| ||||| ||||| ||||| || || ||||||||||| || ||||| || Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||||||| |||| | || || || | ||| || ||||| |||| ||| || || ||| Sbjct 604 GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGTT 663 Query 101447 AAAGTTTTTACAAATATCTGCATGGTT 101473 ||||| ||||| || || ||||| ||| Sbjct 664 AAAGTCTTTACGAAAATTTGCATAGTT 690 >seq39641 Length=587 Score = 113 bits (124), Expect = 4e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| || || ||||| ||||||||||| || ||||| |||||||| || || ||||| Sbjct 328 TACCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCG 269 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| | || | ||| ||||| | ||| ||||| | |||| |||||| || || | Sbjct 268 CTTTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAA 209 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 |||||||||||| || ||||| Sbjct 208 GAGTTTTTACAAAAATTTGCAT 187 >seq5858 Length=3261 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 || ||||| |||| || | ||| || ||||| ||||| |||||||| |||||||| Sbjct 2969 TGTTTACCATCAAAAATAAGACGTTGCTGATCTAATGGAATTCCTTCTTTTTCTTGAATC 2910 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 | | ||||||||||| | || ||||| ||||| ||||| | ||||| |||||||| Sbjct 2909 CTGTCCTTTACAATTTCGATTGTATCAGAAGTTTCAACTTCTAAAGTGATTGTTTTGCCC 2850 Query 101444 GTTAAAGTTTTTACAAATATCTGCATG 101470 | || ||||||||||| || |||||| Sbjct 2849 TTCAACGTTTTTACAAAAATTTGCATG 2823 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| ||||| ||||| ||||| || | ||| || || ||||| || |||||| Sbjct 2558 TACCAGCAAAAATCAAGCGCTGCTGATCCGGTGAAATACCCTCCTTATCCTGTATTTTTG 2499 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| | || | ||||| |||| |||||||||||| | | | |||| || | Sbjct 2498 CTTTAACATTCTCAATCGTGTCTGACGCCTCCACTTCAAGAATAATCTTTTTCCCTAGCA 2439 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | |||||||| || || ||||| Sbjct 2438 ATGTTTTTACGAAGATTTGCAT 2417 >seq9851 Length=2160 Score = 98.7 bits (108), Expect = 8e-16 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| || || ||||| ||||||||||| || ||||| || ||||| || || ||||| Sbjct 1331 TACCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCG 1390 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 || ||| | || | || ||||| | ||| ||||| | |||| |||||| || || | Sbjct 1391 CCTTAACATTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAA 1450 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 |||||||||||| || ||||| Sbjct 1451 GAGTTTTTACAAAGATTTGCAT 1472 >seq13328 Length=1679 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||||||||| || | || || ||||| || || || ||||| ||||| |||||||| Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || ||||||| ||| || ||||| || | ||| || || || Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTACCAGTC 70 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || ||||| || ||||| ||||| Sbjct 69 AATGTTTTCACGAATATTTGCAT 47 >seq27013 Length=870 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| | | |||||||| || |||| ||| || || ||||| || || || Sbjct 98 TACCAGCAAAAACTAGGCGCTGTTGTTCCGGCGAAATACCCTCCTTATCCTGTATCTTCG 157 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| | || || ||||| |||| |||||||||||| ||| ||| | || || | Sbjct 158 CTTTAACATTCTCAACCGTGTCTGACGCTTCCACTTCAAGGATGATTGTTCTTCCAGTCA 217 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | || ||||| || || ||||| Sbjct 218 ATGTCTTTACGAAGATTTGCAT 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396058786473504