Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq3 228 5e-54
seq4886 172 4e-37
seq21486 104 2e-16
seq2700 86.0 4e-11
>seq3
Length=46552
Score = 228 bits (252), Expect = 5e-54
Identities = 274/370 (74%), Gaps = 7/370 (2%)
Strand=Plus/Plus
Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571
|||| ||||| ||| |||||||||||||||| ||||||||| | || ||||| |||
Sbjct 27673 ATTTCAGATGCGAAACGATTGATTGGTCGTAAATTTGATGATGGATCAGTACAATCAGAT 27732
Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGG---TAAACCATATATAGAAGC- 474627
||| |||||||| || || || ||||||| |||||| ||||||| | | | |
Sbjct 27733 ATGAAACATTGGCCATTCAAAGTTATAAATGCTGGTGGCGGTAAACCAAAAGTGCAGGTT 27792
Query 474628 -AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686
|||||| | || || || ||| || | || ||| ||||||| ||||||||||| |
Sbjct 27793 GAATACAAG--GGCGAGACGAAAACCTTCACTCCAGAAGAAATTTCATCAATGGTTTTGG 27850
Query 474687 CCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTA 474746
|||||||| |||| || ||| |||||| || | || | ||||| || || |
Sbjct 27851 TTAAAATGAAGGAAACTGCTGAAGCATTTCTTGGTCATGCGGTCAAGGATGCCGTCATCA 27910
Query 474747 CTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTG 474806
| || || || ||||| ||||| || || || |||||||| |||||| | || |||||
Sbjct 27911 CAGTCCCTGCGTATTTCAATGACTCACAGCGACAAGCAACGAAAGATTCCGGTGCAATTG 27970
Query 474807 CAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTC 474866
| ||||| ||||| || || ||||| |||||||||||||||||||| |||| ||||||
Sbjct 27971 CTGGTCTGAATGTCTTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGGTT 28030
Query 474867 TTGATAAGAA 474876
| || |||||
Sbjct 28031 TGGACAAGAA 28040
Score = 105 bits (116), Expect = 4e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793
||||| ||| | ||||| ||||| ||||| || ||||||||||| |||||||| ||||||
Sbjct 22654 GATGCCGTAGTAACTGTGCCAGCGTATTTCAACGATTCTCAACGACAAGCAACCAAAGAT 22713
Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853
||||| ||| | || | ||||| | || || || || || ||||| || || ||
Sbjct 22714 GCGGGTGCAATATCTGGCTTGAATGTCCTTCGAATCATCAACGAGCCAACTGCTGCTGCT 22773
Query 474854 CTTGCTTATGGTCTTGATAAGAA 474876
|||| |||||||| ||||| ||
Sbjct 22774 ATTGCGTATGGTCTAGATAAAAA 22796
Score = 98.7 bits (108), Expect = 6e-15
Identities = 134/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
|| ||||| |||||||| | || || || ||||| ||||| ||||||||||| ||||||
Sbjct 24327 GGAATTCCGCCTGCTCCTCGTGGTGTGCCACAAATCGAAGTCACTTTTGATATCGATGCA 24386
Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACT 476209
|| |||||||| ||||| |||| |||||||| | | |||| || || || ||
Sbjct 24387 AACGGTATTCTAAATGTCTCTGCACAGGATAAATCCACTGGCAAGCACAATAAGATTACA 24446
Query 476210 ATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCC 476269
||||| || || || | || | | || |||| || | |||||||| ||||||
Sbjct 24447 ATTACCAATGATAAAGGACGTTTGTCGAAGGATGAAATCGAAAGAATGGTTGAGGAAGCC 24506
Query 476270 AAAGAGT 476276
|| |||
Sbjct 24507 GAAAAGT 24513
Score = 95.1 bits (104), Expect = 8e-14
Identities = 147/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 475805 GCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAA 475864
||||| |||||||| ||||| || |||||||||||| | || ||| || || || |||
Sbjct 29040 GCTGTGGCATATGGTGCTGCAGTGCAAGCAGCTATTCTTTCTGGT-GATAAGTCG-GAAG 29097
Query 475865 CTAAATAATA-TTGTACTT-GTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTG 475922
| | || | |||| || | ||||| | || |||||| | ||| ||||||||| |
Sbjct 29098 CCGTACAAGACTTGTTGTTACTCGACGTCGCACCGCTTTCACTTGGTATTGAAACAGCGG 29157
Query 475923 GAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAG 475982
|||| ||||||| ||||||| | | || ||| |||||||| |||| || ||
Sbjct 29158 GAGGTGTTATGACAGCTCTTATTAAGCGGAACACTACTATCCCAACGAAAACGTCTCAAA 29217
Query 475983 TATTTTCCACTTATTCTGATAATCA 476007
|||| |||| || || ||||| ||
Sbjct 29218 CATTTACCACATACTCCGATAACCA 29242
Score = 87.8 bits (96), Expect = 1e-11
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 290843 GCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCT 290902
||||||||||||||||| ||||||| || |||| ||||| |||||| | ||||||
Sbjct 28013 GCTGCTGTTGGTTCATTGATAATTCGCAAGACATTCAGACCAGCAATTGCACCGGAATCT 27954
Query 290903 AAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGC 290955
||||| || || || | ||||| ||||| ||||||||||| || || ||
Sbjct 27953 TTCGTTGCTTGTCGCTGTGAGTCATTGAAATACGCAGGGACTGTGATGACGGC 27901
Score = 86.0 bits (94), Expect = 4e-11
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 474412 AGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACATCTTATTGGAGA 474471
|||||| ||||||| ||||||||||| | ||||| || ||||||| |||||||| ||
Sbjct 27317 AGGTAACCGAACAACGCCATCATATGTGGCATTTACCGACACTGAACGCCTTATTGGTGA 27376
Query 474472 TGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTG 474518
||| |||||| |||| | |||| || || |||||| ||||||
Sbjct 27377 TGCAGCTAAAAATCAGGTTGCAATGAACCCGCACAATACTGTTTTTG 27423
>seq4886
Length=3728
Score = 172 bits (190), Expect = 4e-37
Identities = 169/218 (78%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 474659 CCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTT 474718
|| ||| ||||||| | |||||| | | ||||||||| ||| ||| ||||||||
Sbjct 2404 CCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAATTGCGGAAGCATATCTT 2345
Query 474719 GGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGT 474778
||| ||||||| | ||||||| | || || || || || ||||||||| | |||||
Sbjct 2344 GGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTTTAATGATGCACAACGC 2285
Query 474779 CAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAA 474838
||||| ||||||||||| || | ||||| || || |||||| | ||||| || ||||||
Sbjct 2284 CAAGCCACTAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTCCGTATCATCAATGAA 2225
Query 474839 CCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876
|||||||| ||||| |||||||||| || ||||||||
Sbjct 2224 CCAACAGCTGCCGCTATTGCTTATGGGCTGGATAAGAA 2187
Score = 98.7 bits (108), Expect = 6e-15
Identities = 120/161 (75%), Gaps = 2/161 (1%)
Strand=Plus/Plus
Query 290843 GCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCT 290902
|| |||||||||||||| || || | | |||| || || ||||| | | | ||||
Sbjct 2214 GCAGCTGTTGGTTCATTGATGATACGGACAACATTGAGGCCGGCAATAGTACCTGCATCT 2273
Query 290903 AAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCtttttcc 290962
||| || |||||||| ||||||||||| |||||||| ||||| | ||| || | || |
Sbjct 2274 TTAGTGGCTTGGCGTTGTGCATCATTAAAGTAAGCAGGTACTGTGACAACTGCATGTTTC 2333
Query 290963 actttctttttcaa-ataattttctgccatttgttttattt 291002
|| ||||||| ||| ||| ||| || |||| ||| ||||
Sbjct 2334 AC-TTCTTTTCCAAGATATGCTTCCGCAATTTCTTTCATTT 2373
Score = 87.8 bits (96), Expect = 1e-11
Identities = 169/247 (68%), Gaps = 8/247 (3%)
Strand=Plus/Minus
Query 474355 TTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGG 474414
|| ||||||||| | ||||| ||||||| ||| ||||| ||||||||||| |||||
Sbjct 2805 TTGCAGTTGTGTTGGTGTTTATAAAAATGGACGAGTGGAAATCATTGCCAATGAACAAGG 2746
Query 474415 TAATAGAACAACACCATCATATGTTTCTTTTAC------TGAAACTGAACATCTTATTGG 474468
|||||| | || || || || || | || || || ||| | |||||||||
Sbjct 2745 TAATAGGATCACGCCGTCTTACGTAGCATTCACTGGTGATGGCGGTGAGCGTCTTATTGG 2686
Query 474469 AGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGTTAATACTATTTTTGATGCTAAAA 474527
|| || || ||| | | || || || | ||||| | ||||| | || |||| ||
Sbjct 2685 CGACGCAGCCAAA-AACCAGTTGACAACAAATCCGGAAAATACAGTCTTCGATGTCAAGC 2627
Query 474528 GATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCATTGGCCTT 474587
| |||||||| || | | | ||| | ||||| ||| ||||| ||||||||||
Sbjct 2626 GCTTGATTGGGCGAGAATACAAAGATTCGACTGTACAACAAGATATCAAACATTGGCCTT 2567
Query 474588 TTAAGGT 474594
| || ||
Sbjct 2566 TCAATGT 2560
>seq21486
Length=1089
Score = 104 bits (114), Expect = 2e-16
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|||||||| || || || ||||| || ||| || | |||||| || | || ||
Sbjct 156 CGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTA 215
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| ||| || ||||| ||||| ||||| || | || |||||||| || ||||| ||
Sbjct 216 CGACCATCCTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCC 275
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAAG 480730
|||||||| ||||||||| ||| || ||| || ||||| | | | | || |||
Sbjct 276 TCCTTGTCCTGAATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAAC 335
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || | |||||||| || | ||| ||||||||||||||
Sbjct 336 GTTA-TGGTTTTACCCGTTAAAGTTTTAACGAAAATTTG 373
Score = 89.7 bits (98), Expect = 3e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||| ||||||||||| || ||||| || ||||||||||| ||||||||||||||
Sbjct 900 CCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCTTGGCC 959
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| ||| || ||||||| | | | ||| || || || ||||| || || |
Sbjct 960 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCAAC 1019
Query 480753 GTCTTAACGAAAATTTG 480769
|| || || || |||||
Sbjct 1020 GTTTTTACAAAGATTTG 1036
>seq2700
Length=5623
Score = 86.0 bits (94), Expect = 4e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 480630 TTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTT 480689
|| || |||||||| | || || ||||| ||||| || ||||| ||||| ||||||||
Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603
Query 480690 TGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTG 480749
||| ||| |||||| ||||| | | | ||||| || || || ||||| ||
Sbjct 604 GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGTT 663
Query 480750 AGAGTCTTAACGAAAATTTG 480769
| |||||| |||||||||||
Sbjct 664 AAAGTCTTTACGAAAATTTG 683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3266228685289856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |