Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3 228 5e-54 seq4886 172 4e-37 seq21486 104 2e-16 seq2700 86.0 4e-11 >seq3 Length=46552 Score = 228 bits (252), Expect = 5e-54 Identities = 274/370 (74%), Gaps = 7/370 (2%) Strand=Plus/Plus Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 |||| ||||| ||| |||||||||||||||| ||||||||| | || ||||| ||| Sbjct 27673 ATTTCAGATGCGAAACGATTGATTGGTCGTAAATTTGATGATGGATCAGTACAATCAGAT 27732 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGG---TAAACCATATATAGAAGC- 474627 ||| |||||||| || || || ||||||| |||||| ||||||| | | | | Sbjct 27733 ATGAAACATTGGCCATTCAAAGTTATAAATGCTGGTGGCGGTAAACCAAAAGTGCAGGTT 27792 Query 474628 -AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 |||||| | || || || ||| || | || ||| ||||||| ||||||||||| | Sbjct 27793 GAATACAAG--GGCGAGACGAAAACCTTCACTCCAGAAGAAATTTCATCAATGGTTTTGG 27850 Query 474687 CCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTA 474746 |||||||| |||| || ||| |||||| || | || | ||||| || || | Sbjct 27851 TTAAAATGAAGGAAACTGCTGAAGCATTTCTTGGTCATGCGGTCAAGGATGCCGTCATCA 27910 Query 474747 CTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTG 474806 | || || || ||||| ||||| || || || |||||||| |||||| | || ||||| Sbjct 27911 CAGTCCCTGCGTATTTCAATGACTCACAGCGACAAGCAACGAAAGATTCCGGTGCAATTG 27970 Query 474807 CAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTC 474866 | ||||| ||||| || || ||||| |||||||||||||||||||| |||| |||||| Sbjct 27971 CTGGTCTGAATGTCTTGCGAATTATCAATGAACCAACAGCAGCCGCTATTGCCTATGGTT 28030 Query 474867 TTGATAAGAA 474876 | || ||||| Sbjct 28031 TGGACAAGAA 28040 Score = 105 bits (116), Expect = 4e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| ||| | ||||| ||||| ||||| || ||||||||||| |||||||| |||||| Sbjct 22654 GATGCCGTAGTAACTGTGCCAGCGTATTTCAACGATTCTCAACGACAAGCAACCAAAGAT 22713 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 ||||| ||| | || | ||||| | || || || || || ||||| || || || Sbjct 22714 GCGGGTGCAATATCTGGCTTGAATGTCCTTCGAATCATCAACGAGCCAACTGCTGCTGCT 22773 Query 474854 CTTGCTTATGGTCTTGATAAGAA 474876 |||| |||||||| ||||| || Sbjct 22774 ATTGCGTATGGTCTAGATAAAAA 22796 Score = 98.7 bits (108), Expect = 6e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || ||||| |||||||| | || || || ||||| ||||| ||||||||||| |||||| Sbjct 24327 GGAATTCCGCCTGCTCCTCGTGGTGTGCCACAAATCGAAGTCACTTTTGATATCGATGCA 24386 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACT 476209 || |||||||| ||||| |||| |||||||| | | |||| || || || || Sbjct 24387 AACGGTATTCTAAATGTCTCTGCACAGGATAAATCCACTGGCAAGCACAATAAGATTACA 24446 Query 476210 ATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCC 476269 ||||| || || || | || | | || |||| || | |||||||| |||||| Sbjct 24447 ATTACCAATGATAAAGGACGTTTGTCGAAGGATGAAATCGAAAGAATGGTTGAGGAAGCC 24506 Query 476270 AAAGAGT 476276 || ||| Sbjct 24507 GAAAAGT 24513 Score = 95.1 bits (104), Expect = 8e-14 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 475805 GCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAA 475864 ||||| |||||||| ||||| || |||||||||||| | || ||| || || || ||| Sbjct 29040 GCTGTGGCATATGGTGCTGCAGTGCAAGCAGCTATTCTTTCTGGT-GATAAGTCG-GAAG 29097 Query 475865 CTAAATAATA-TTGTACTT-GTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTG 475922 | | || | |||| || | ||||| | || |||||| | ||| ||||||||| | Sbjct 29098 CCGTACAAGACTTGTTGTTACTCGACGTCGCACCGCTTTCACTTGGTATTGAAACAGCGG 29157 Query 475923 GAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAG 475982 |||| ||||||| ||||||| | | || ||| |||||||| |||| || || Sbjct 29158 GAGGTGTTATGACAGCTCTTATTAAGCGGAACACTACTATCCCAACGAAAACGTCTCAAA 29217 Query 475983 TATTTTCCACTTATTCTGATAATCA 476007 |||| |||| || || ||||| || Sbjct 29218 CATTTACCACATACTCCGATAACCA 29242 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 290843 GCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCT 290902 ||||||||||||||||| ||||||| || |||| ||||| |||||| | |||||| Sbjct 28013 GCTGCTGTTGGTTCATTGATAATTCGCAAGACATTCAGACCAGCAATTGCACCGGAATCT 27954 Query 290903 AAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGC 290955 ||||| || || || | ||||| ||||| ||||||||||| || || || Sbjct 27953 TTCGTTGCTTGTCGCTGTGAGTCATTGAAATACGCAGGGACTGTGATGACGGC 27901 Score = 86.0 bits (94), Expect = 4e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 474412 AGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACATCTTATTGGAGA 474471 |||||| ||||||| ||||||||||| | ||||| || ||||||| |||||||| || Sbjct 27317 AGGTAACCGAACAACGCCATCATATGTGGCATTTACCGACACTGAACGCCTTATTGGTGA 27376 Query 474472 TGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTG 474518 ||| |||||| |||| | |||| || || |||||| |||||| Sbjct 27377 TGCAGCTAAAAATCAGGTTGCAATGAACCCGCACAATACTGTTTTTG 27423 >seq4886 Length=3728 Score = 172 bits (190), Expect = 4e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 474659 CCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTT 474718 || ||| ||||||| | |||||| | | ||||||||| ||| ||| |||||||| Sbjct 2404 CCTGAAGAAATTTCAGCGATGGTTCTCGGTAAAATGAAAGAAATTGCGGAAGCATATCTT 2345 Query 474719 GGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGT 474778 ||| ||||||| | ||||||| | || || || || || ||||||||| | ||||| Sbjct 2344 GGAAAAGAAGTGAAACATGCAGTTGTCACAGTACCTGCTTACTTTAATGATGCACAACGC 2285 Query 474779 CAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAA 474838 ||||| ||||||||||| || | ||||| || || |||||| | ||||| || |||||| Sbjct 2284 CAAGCCACTAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTCCGTATCATCAATGAA 2225 Query 474839 CCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 |||||||| ||||| |||||||||| || |||||||| Sbjct 2224 CCAACAGCTGCCGCTATTGCTTATGGGCTGGATAAGAA 2187 Score = 98.7 bits (108), Expect = 6e-15 Identities = 120/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 290843 GCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCT 290902 || |||||||||||||| || || | | |||| || || ||||| | | | |||| Sbjct 2214 GCAGCTGTTGGTTCATTGATGATACGGACAACATTGAGGCCGGCAATAGTACCTGCATCT 2273 Query 290903 AAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCtttttcc 290962 ||| || |||||||| ||||||||||| |||||||| ||||| | ||| || | || | Sbjct 2274 TTAGTGGCTTGGCGTTGTGCATCATTAAAGTAAGCAGGTACTGTGACAACTGCATGTTTC 2333 Query 290963 actttctttttcaa-ataattttctgccatttgttttattt 291002 || ||||||| ||| ||| ||| || |||| ||| |||| Sbjct 2334 AC-TTCTTTTCCAAGATATGCTTCCGCAATTTCTTTCATTT 2373 Score = 87.8 bits (96), Expect = 1e-11 Identities = 169/247 (68%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 474355 TTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGG 474414 || ||||||||| | ||||| ||||||| ||| ||||| ||||||||||| ||||| Sbjct 2805 TTGCAGTTGTGTTGGTGTTTATAAAAATGGACGAGTGGAAATCATTGCCAATGAACAAGG 2746 Query 474415 TAATAGAACAACACCATCATATGTTTCTTTTAC------TGAAACTGAACATCTTATTGG 474468 |||||| | || || || || || | || || || ||| | ||||||||| Sbjct 2745 TAATAGGATCACGCCGTCTTACGTAGCATTCACTGGTGATGGCGGTGAGCGTCTTATTGG 2686 Query 474469 AGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGTTAATACTATTTTTGATGCTAAAA 474527 || || || ||| | | || || || | ||||| | ||||| | || |||| || Sbjct 2685 CGACGCAGCCAAA-AACCAGTTGACAACAAATCCGGAAAATACAGTCTTCGATGTCAAGC 2627 Query 474528 GATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCATTGGCCTT 474587 | |||||||| || | | | ||| | ||||| ||| ||||| |||||||||| Sbjct 2626 GCTTGATTGGGCGAGAATACAAAGATTCGACTGTACAACAAGATATCAAACATTGGCCTT 2567 Query 474588 TTAAGGT 474594 | || || Sbjct 2566 TCAATGT 2560 >seq21486 Length=1089 Score = 104 bits (114), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| || || || ||||| || ||| || | |||||| || | || || Sbjct 156 CGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTA 215 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||| || ||||| ||||| ||||| || | || |||||||| || ||||| || Sbjct 216 CGACCATCCTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCC 275 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAAG 480730 |||||||| ||||||||| ||| || ||| || ||||| | | | | || ||| Sbjct 276 TCCTTGTCCTGAATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAAC 335 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | |||||||| || | ||| |||||||||||||| Sbjct 336 GTTA-TGGTTTTACCCGTTAAAGTTTTAACGAAAATTTG 373 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||| ||||||||||| || ||||| || ||||||||||| |||||||||||||| Sbjct 900 CCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCTTGGCC 959 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| ||| || ||||||| | | | ||| || || || ||||| || || | Sbjct 960 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCAAC 1019 Query 480753 GTCTTAACGAAAATTTG 480769 || || || || ||||| Sbjct 1020 GTTTTTACAAAGATTTG 1036 >seq2700 Length=5623 Score = 86.0 bits (94), Expect = 4e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 480630 TTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTT 480689 || || |||||||| | || || ||||| ||||| || ||||| ||||| |||||||| Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603 Query 480690 TGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTG 480749 ||| ||| |||||| ||||| | | | ||||| || || || ||||| || Sbjct 604 GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGTT 663 Query 480750 AGAGTCTTAACGAAAATTTG 480769 | |||||| ||||||||||| Sbjct 664 AAAGTCTTTACGAAAATTTG 683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266228685289856