Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq13328 91.5 2e-13 seq2700 91.5 2e-13 >seq13328 Length=1679 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | |||||||||||||| || || ||||| | || || ||| ||| Sbjct 47 ATGCAAATATTCGTGAAAACATTGACTGGTAAGACGATTACCCTTGAGGTAGAATCGTCT 106 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| |||||| || ||||| ||||| || || || || || Sbjct 107 GATACCATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAAGGTATCCCACCTGATCAG 166 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 ||| || | |||| ||| ||||| Sbjct 167 CAACGACTTATTTTTGCAGGTAA 189 >seq2700 Length=5623 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || || ||||| || || || ||| | || |||||| || Sbjct 686 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAGACGATCACACTTGAGGTCGAATCCTCG 627 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| || || || || |||||||||||||||||||| || Sbjct 626 GATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCCAGATCAG 567 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 || ||||||||| ||| ||||| Sbjct 566 CAGCGATTGATTTTTGCAGGTAA 544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731456003955200