Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq39641 113 9e-20
seq21486 111 3e-19
seq13328 111 3e-19
seq9851 98.7 2e-15
seq2700 91.5 3e-13
>seq39641
Length=587
Score = 113 bits (124), Expect = 9e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
||||||| ||||| |||| ||||||||| ||||| ||||||||||| || || |||||
Sbjct 328 TACCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCG 269
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||| ||||| |||| ||| || | ||||||||| | || || ||||||||||| |
Sbjct 268 CTTTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAA 209
Query 192515 ATGTTTTAATAAATATCTGCAT 192536
||||| | ||| || |||||
Sbjct 208 GAGTTTTTACAAAAATTTGCAT 187
>seq21486
Length=1089
Score = 111 bits (122), Expect = 3e-19
Identities = 135/184 (73%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||||||||| || || | || || |||| |||| |||||| || |||||||| ||||
Sbjct 194 GATATTATAGTCCGACAGCGTACGACCATCCTCCAGTTGTTTTCCGGCAAAGATCAATCG 253
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||||||||| ||||| || || || || || || || || ||| || || || |
Sbjct 254 CTGTTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTTGCTTTAACGTTTTCGATGGT 313
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||| || | || ||||| | || ||||||||||| ||||| ||||||| || || ||
Sbjct 314 ATCCGAAGCCTCCACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTAACGAAAATTTG 373
Query 192534 CATT 192537
||||
Sbjct 374 CATT 377
Score = 89.7 bits (98), Expect = 1e-12
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
||||||| || || | | ||| ||||| || || ||||||||||| ||||| || ||
Sbjct 898 TACCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCTTGG 957
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|||||||| || | ||| || | ||| ||||||||||| || ||||| || || |
Sbjct 958 CCTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCA 1017
Query 192515 ATGTTTTAATAAATATCTGCAT 192536
| ||||| | ||| || |||||
Sbjct 1018 ACGTTTTTACAAAGATTTGCAT 1039
>seq13328
Length=1679
Score = 111 bits (122), Expect = 3e-19
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||| ||||| || | || || ||||||||||| || ||||| ||||| || ||||||
Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
|| ||||| || | ||| ||||||||||| || || ||||| || ||||||||
Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTACCAGTC 70
Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539
|||||||| | ||||| ||||| ||
Sbjct 69 AATGTTTTCACGAATATTTGCATCTT 44
>seq9851
Length=2160
Score = 98.7 bits (108), Expect = 2e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
||||||| ||||| |||| ||||||||| ||||| ||||| ||||| || || |||||
Sbjct 1331 TACCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCG 1390
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|| ||||| || | ||| || | ||||||||| | || || ||||||||||| |
Sbjct 1391 CCTTAACATTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAA 1450
Query 192515 ATGTTTTAATAAATATCTGCAT 192536
||||| | ||| || |||||
Sbjct 1451 GAGTTTTTACAAAGATTTGCAT 1472
>seq2700
Length=5623
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||| ||||| || |||| ||| ||||| || ||||| |||||||| || || || ||
Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
||||||||| || | ||| || ||||| || || || || || || |||||||||
Sbjct 604 GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGTT 663
Query 192514 AATGTTTTAATAAATATCTGCAT 192536
|| || || | || || |||||
Sbjct 664 AAAGTCTTTACGAAAATTTGCAT 686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 983906432107200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |