Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq39641 113 9e-20 seq21486 111 3e-19 seq13328 111 3e-19 seq9851 98.7 2e-15 seq2700 91.5 3e-13 >seq39641 Length=587 Score = 113 bits (124), Expect = 9e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 ||||||| ||||| |||| ||||||||| ||||| ||||||||||| || || ||||| Sbjct 328 TACCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCG 269 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 ||| ||||| |||| ||| || | ||||||||| | || || ||||||||||| | Sbjct 268 CTTTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAA 209 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || ||||| Sbjct 208 GAGTTTTTACAAAAATTTGCAT 187 >seq21486 Length=1089 Score = 111 bits (122), Expect = 3e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||||||||| || || | || || |||| |||| |||||| || |||||||| |||| Sbjct 194 GATATTATAGTCCGACAGCGTACGACCATCCTCCAGTTGTTTTCCGGCAAAGATCAATCG 253 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||||||||| ||||| || || || || || || || || ||| || || || | Sbjct 254 CTGTTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTTGCTTTAACGTTTTCGATGGT 313 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || | || ||||| | || ||||||||||| ||||| ||||||| || || || Sbjct 314 ATCCGAAGCCTCCACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTAACGAAAATTTG 373 Query 192534 CATT 192537 |||| Sbjct 374 CATT 377 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 ||||||| || || | | ||| ||||| || || ||||||||||| ||||| || || Sbjct 898 TACCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCTTGG 957 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||||||| || | ||| || | ||| ||||||||||| || ||||| || || | Sbjct 958 CCTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCA 1017 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 | ||||| | ||| || ||||| Sbjct 1018 ACGTTTTTACAAAGATTTGCAT 1039 >seq13328 Length=1679 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| ||||| || | || || ||||||||||| || ||||| ||||| || |||||| Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || ||||| || | ||| ||||||||||| || || ||||| || |||||||| Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTACCAGTC 70 Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539 |||||||| | ||||| ||||| || Sbjct 69 AATGTTTTCACGAATATTTGCATCTT 44 >seq9851 Length=2160 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 ||||||| ||||| |||| ||||||||| ||||| ||||| ||||| || || ||||| Sbjct 1331 TACCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCG 1390 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 || ||||| || | ||| || | ||||||||| | || || ||||||||||| | Sbjct 1391 CCTTAACATTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAA 1450 Query 192515 ATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || ||||| Sbjct 1451 GAGTTTTTACAAAGATTTGCAT 1472 >seq2700 Length=5623 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 ||||| ||||| || |||| ||| ||||| || ||||| |||||||| || || || || Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 ||||||||| || | ||| || ||||| || || || || || || ||||||||| Sbjct 604 GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGTT 663 Query 192514 AATGTTTTAATAAATATCTGCAT 192536 || || || | || || ||||| Sbjct 664 AAAGTCTTTACGAAAATTTGCAT 686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983906432107200