Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq13328 120 5e-22
seq39641 104 4e-17
seq21486 100 5e-16
seq2700 100 5e-16
seq9851 89.7 9e-13
seq5858 87.8 3e-12
>seq13328
Length=1679
Score = 120 bits (132), Expect = 5e-22
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||| |||||||| | || || || |||||||| || ||||| ||||| || ||||||
Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
|| ||||| || ||||| ||||||||||| || || ||||| || ||||||||
Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTACCAGTC 70
Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072
|||||||| | |||||| ||||| ||
Sbjct 69 AATGTTTTCACGAATATTTGCATCTT 44
>seq39641
Length=587
Score = 104 bits (114), Expect = 4e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||| || || |||| |||||| || ||||| ||||||||||| || || |||||
Sbjct 328 TACCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCG 269
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||| ||||| |||||||| || | ||||||||| | || || ||||||||||| |
Sbjct 268 CTTTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAA 209
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
||||| | || || |||||
Sbjct 208 GAGTTTTTACAAAAATTTGCAT 187
>seq21486
Length=1089
Score = 100 bits (110), Expect = 5e-16
Identities = 132/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
|||||||| || || | | || | || |||| |||||| || ||||| || |||| |
Sbjct 195 ATATTATAGTCCGACAGCGTACGACCATCCTCCAGTTGTTTTCCGGCAAAGATCAATCGC 254
Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007
||||| || ||||| || || || || || || || || ||| || || || |||
Sbjct 255 TGTTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTTGCTTTAACGTTTTCGATGGTA 314
Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067
|| || | || ||||| | || ||||||||||| ||||| ||||||| ||| || |||
Sbjct 315 TCCGAAGCCTCCACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTAACGAAAATTTGC 374
Query 172068 ATT 172070
|||
Sbjct 375 ATT 377
Score = 89.7 bits (98), Expect = 9e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||| ||||| | | ||| || || || || ||||||||||| ||||| || ||
Sbjct 898 TACCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCTTGG 957
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|||||||| || ||||| || | ||| ||||||||||| || ||||| || || |
Sbjct 958 CCTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCA 1017
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
| ||||| | || || |||||
Sbjct 1018 ACGTTTTTACAAAGATTTGCAT 1039
>seq2700
Length=5623
Score = 100 bits (110), Expect = 5e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986
||||| |||||||| |||| ||| || || || ||||| |||||||| || || || ||
Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603
Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046
||||||||| || ||||| || ||||| || || || || || || |||||||||
Sbjct 604 GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGTT 663
Query 172047 AATGTTTTAATGAATATCTGCAT 172069
|| || || | ||| || |||||
Sbjct 664 AAAGTCTTTACGAAAATTTGCAT 686
>seq9851
Length=2160
Score = 89.7 bits (98), Expect = 9e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||| || || |||| |||||| || ||||| ||||| ||||| || || |||||
Sbjct 1331 TACCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCG 1390
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
|| ||||| || ||||| || | ||||||||| | || || ||||||||||| |
Sbjct 1391 CCTTAACATTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAA 1450
Query 172048 ATGTTTTAATGAATATCTGCAT 172069
||||| | || || |||||
Sbjct 1451 GAGTTTTTACAAAGATTTGCAT 1472
>seq5858
Length=3261
Score = 87.8 bits (96), Expect = 3e-12
Identities = 112/154 (73%), Gaps = 3/154 (2%)
Strand=Plus/Minus
Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987
||||||||||||| || | ||| || || |||| || || || ||||| ||||||||
Sbjct 2558 TACCAGCAAAAATCAAGCGCTGCTGATCCGGTGAAATACCCTCCTTATCCTGTATTTTTG 2499
Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047
||| ||||| || || ||||||| || ||||| ||| |||| |||| || |
Sbjct 2498 CTTTAACATTCTCAATCGTGTCTGACGCCTCCACTTCAAGAATAATCTTTTTCCCTAGCA 2439
Query 172048 ATGTTTTAATGAATATCTGCATTTT---ATTATA 172078
||||||| | ||| || ||||| || ||||||
Sbjct 2438 ATGTTTTTACGAAGATTTGCATATTTGCATTATA 2405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904621520697600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |