Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq13328 120 5e-22 seq39641 104 4e-17 seq21486 100 5e-16 seq2700 100 5e-16 seq9851 89.7 9e-13 seq5858 87.8 3e-12 >seq13328 Length=1679 Score = 120 bits (132), Expect = 5e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| |||||||| | || || || |||||||| || ||||| ||||| || |||||| Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || ||||| || ||||| ||||||||||| || || ||||| || |||||||| Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTACCAGTC 70 Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072 |||||||| | |||||| ||||| || Sbjct 69 AATGTTTTCACGAATATTTGCATCTT 44 >seq39641 Length=587 Score = 104 bits (114), Expect = 4e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||| || || |||| |||||| || ||||| ||||||||||| || || ||||| Sbjct 328 TACCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCG 269 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| |||||||| || | ||||||||| | || || ||||||||||| | Sbjct 268 CTTTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAA 209 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 ||||| | || || ||||| Sbjct 208 GAGTTTTTACAAAAATTTGCAT 187 >seq21486 Length=1089 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 |||||||| || || | | || | || |||| |||||| || ||||| || |||| | Sbjct 195 ATATTATAGTCCGACAGCGTACGACCATCCTCCAGTTGTTTTCCGGCAAAGATCAATCGC 254 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || ||||| || || || || || || || || ||| || || || ||| Sbjct 255 TGTTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTTGCTTTAACGTTTTCGATGGTA 314 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | || ||||| | || ||||||||||| ||||| ||||||| ||| || ||| Sbjct 315 TCCGAAGCCTCCACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTAACGAAAATTTGC 374 Query 172068 ATT 172070 ||| Sbjct 375 ATT 377 Score = 89.7 bits (98), Expect = 9e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||| ||||| | | ||| || || || || ||||||||||| ||||| || || Sbjct 898 TACCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCTTGG 957 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||||||| || ||||| || | ||| ||||||||||| || ||||| || || | Sbjct 958 CCTTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCA 1017 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 | ||||| | || || ||||| Sbjct 1018 ACGTTTTTACAAAGATTTGCAT 1039 >seq2700 Length=5623 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| |||||||| |||| ||| || || || ||||| |||||||| || || || || Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 ||||||||| || ||||| || ||||| || || || || || || ||||||||| Sbjct 604 GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGTT 663 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 || || || | ||| || ||||| Sbjct 664 AAAGTCTTTACGAAAATTTGCAT 686 >seq9851 Length=2160 Score = 89.7 bits (98), Expect = 9e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||| || || |||| |||||| || ||||| ||||| ||||| || || ||||| Sbjct 1331 TACCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCG 1390 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 || ||||| || ||||| || | ||||||||| | || || ||||||||||| | Sbjct 1391 CCTTAACATTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAA 1450 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 ||||| | || || ||||| Sbjct 1451 GAGTTTTTACAAAGATTTGCAT 1472 >seq5858 Length=3261 Score = 87.8 bits (96), Expect = 3e-12 Identities = 112/154 (73%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| || | ||| || || |||| || || || ||||| |||||||| Sbjct 2558 TACCAGCAAAAATCAAGCGCTGCTGATCCGGTGAAATACCCTCCTTATCCTGTATTTTTG 2499 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| || || ||||||| || ||||| ||| |||| |||| || | Sbjct 2498 CTTTAACATTCTCAATCGTGTCTGACGCCTCCACTTCAAGAATAATCTTTTTCCCTAGCA 2439 Query 172048 ATGTTTTAATGAATATCTGCATTTT---ATTATA 172078 ||||||| | ||| || ||||| || |||||| Sbjct 2438 ATGTTTTTACGAAGATTTGCATATTTGCATTATA 2405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904621520697600