Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq21486 140 3e-28 seq9851 98.7 9e-16 seq39641 95.1 1e-14 seq2700 87.8 2e-12 >seq21486 Length=1089 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || ||||||| |||| |||||||| || ||| | ||||| || || | Sbjct 376 ATGCAAATTTTCGTTAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTCG 317 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| |||||| || ||||| || || || || || |||||| Sbjct 316 GATACCATCGAAAACGTTAAAGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCAA 257 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||||||| ||||| ||||||||| | | |||| || ||||| Sbjct 256 CAGCGATTGATCTTTGCCGGAAAACAACTGGAGGATGGTCGTACGCTGTCGGACTATAAT 197 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||||||||| || ||| |||| | || | ||||| || Sbjct 196 ATCCAGAAGGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGG 150 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | |||||| | || || ||||| || || || ||||| |||||| | Sbjct 1039 ATGCAAATCTTTGTAAAAACGTTGACAGGCAAAACAATCACTCTAGAAGTTGAAGCCTCT 980 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| ||||| ||||| ||||||||||||||||| || || ||||| Sbjct 979 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCGCCAGATCAG 920 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||| | || || || || Sbjct 919 CAGCGTCTTATTTTCGCTGG 900 >seq9851 Length=2160 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| || || |||||||| || || ||||||||||||| | Sbjct 1472 ATGCAAATCTTTGTAAAAACTCTTACTGGTAAAACGATCACATTCGAAGTAGAAGCATCT 1413 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || || | ||| | ||| ||||| |||||||| ||||| || || ||||| Sbjct 1412 GATACCATCGAGAATGTTAAGGCGAAA-ATCCAGGACAAAGAGGGAATTCCACCAGATCA 1354 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||| || |||||||| || || Sbjct 1353 ACAGCGATTGATCTTCGCTGG 1333 >seq39641 Length=587 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || |||||||| || || | ||||||||||| | Sbjct 187 ATGCAAATTTTTGTAAAAACTCTTACTGGTAAAACGATCACATTGGAAGTAGAAGCATCT 246 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| || ||||| |||||||||||||| || || |||||| Sbjct 247 GATACTATCGAGAATGTGAAAGCGAAAATCCAGGACAAAGAAGGAATTCCACCGGATCAA 306 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || |||||||| || || Sbjct 307 CAGCGATTGATCTTCGCTGG 326 >seq2700 Length=5623 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || || | || || |||| ||||| || || || || || || ||| || Sbjct 689 ACTATGCAAATTTTCGTAAAGACTTTAACTGGTAAGACGATCACACTTGAGGTCGAATCC 630 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | |||| |||||| ||||| || ||||||||||| |||||||| ||| Sbjct 629 TCGGATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCCAGAT 570 Query 24821 CAACAACGTTTGATCTTTGCCGGGAA 24846 || || || ||||| ||||| || || Sbjct 569 CAGCAGCGATTGATTTTTGCAGGTAA 544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449641878204160