Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq21486 93.3 3e-14 seq9851 82.4 6e-11 >seq21486 Length=1089 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 |||||||| |||||||| || ||||||||||| ||| || | || ||| |||| | || Sbjct 918 TGCTGATCTGGCGGAATTCCTTCTTTGTCTTG-AATCTTGGCCTTTACATTTTCGATTGT 976 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||||| ||| ||||| ||||| || |||||||| || || ||||| ||||| || || Sbjct 977 ATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCAACGTTTTTACAAAGATTTG 1036 Query 29784 CAT 29786 ||| Sbjct 1037 CAT 1039 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 |||||||| || || || |||||||| || || |||||| | ||| ||| | || | || Sbjct 602 TGCTGATCAGGAGGGATGCCCTCTTTATCCTG-AATTTTGGCTTTCACATTCTCGATCGT 660 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || ||| ||||||||| || ||||| ||||||||||| | || || || || ||||| Sbjct 661 ATCCGAAGCTTCTACTTCCAGCGTTATGGTTTTGCCAGTAAGCGTCTTTACGAAAATCTG 720 Query 29784 CAT 29786 ||| Sbjct 721 CAT 723 >seq9851 Length=2160 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 ||||| | ||||||| || ||||| || ||||| ||||||||||| || | ||| Sbjct 1333 CCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCGCC 1392 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| | || | || ||||| ||||||||| | || || ||||| ||||| | Sbjct 1393 TTAACATTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAAGA 1452 Query 29767 GTTTTAACAAATATCTGCAT 29786 ||||| ||||| || ||||| Sbjct 1453 GTTTTTACAAAGATTTGCAT 1472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385005715371552