Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq21486 93.3 3e-14
seq9851 82.4 6e-11
>seq21486
Length=1089
Score = 93.3 bits (102), Expect = 3e-14
Identities = 96/123 (78%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|||||||| |||||||| || ||||||||||| ||| || | || ||| |||| | ||
Sbjct 918 TGCTGATCTGGCGGAATTCCTTCTTTGTCTTG-AATCTTGGCCTTTACATTTTCGATTGT 976
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
||||| ||| ||||| ||||| || |||||||| || || ||||| ||||| || ||
Sbjct 977 ATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCAACGTTTTTACAAAGATTTG 1036
Query 29784 CAT 29786
|||
Sbjct 1037 CAT 1039
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/123 (76%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723
|||||||| || || || |||||||| || || |||||| | ||| ||| | || | ||
Sbjct 602 TGCTGATCAGGAGGGATGCCCTCTTTATCCTG-AATTTTGGCTTTCACATTCTCGATCGT 660
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
|| ||| ||||||||| || ||||| ||||||||||| | || || || || |||||
Sbjct 661 ATCCGAAGCTTCTACTTCCAGCGTTATGGTTTTGCCAGTAAGCGTCTTTACGAAAATCTG 720
Query 29784 CAT 29786
|||
Sbjct 721 CAT 723
>seq9851
Length=2160
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
||||| | ||||||| || ||||| || ||||| ||||||||||| || | |||
Sbjct 1333 CCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCGCC 1392
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| ||| | || | || ||||| ||||||||| | || || ||||| ||||| |
Sbjct 1393 TTAACATTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAAGA 1452
Query 29767 GTTTTAACAAATATCTGCAT 29786
||||| ||||| || |||||
Sbjct 1453 GTTTTTACAAAGATTTGCAT 1472
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385005715371552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |