Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq3 201 8e-46
seq4886 174 1e-37
>seq3
Length=46552
Score = 201 bits (222), Expect = 8e-46
Identities = 268/370 (72%), Gaps = 7/370 (2%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| || || | |||||| |||| ||| || || ||||||||||| ||||||| ||| |||
Sbjct 28040 TTCTTGTCCAAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAAGACA 27981
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| |||||||||||| || | |||||| || ||||||| ||||| || || |||||
Sbjct 27980 TTCAGACCAGCAATTGCACCGGAATCTTTCGTTGCTTGTCGCTGTGAGTCATTGAAATAC 27921
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511
||||| || || || |||||||| | || | | |||| | | || || ||||
Sbjct 27920 GCAGGGACTGTGATGACGGCATCCTTGACCGCATGACCAAGAAATGCTTCAGCAGTTTCC 27861
Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA--GAATATTGCTTGGATTCAT 282569
||||||||| |||| |||||||||||||| ||||||| ||| || || | ||
Sbjct 27860 TTCATTTTAACCAAAACCATTGATGAAATTTCTTCTGGAGTGAAGGTT--TTCGTCTCGC 27803
Query 282570 TTTGATATGATACTTCAAAATATGGTTTA---TTACCAACATTAATAACTTTAAATGGCC 282626
| ||| || | | | ||||||| |||| |||| |||||||| |||||||
Sbjct 27802 CCTTGTATTCAACCTGCACTTTTGGTTTACCGCCACCAGCATTTATAACTTTGAATGGCC 27743
Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686
||| ||||||||||||||| || | |||| ||| | | |||||| |||||||| |
Sbjct 27742 AATGTTTCATATCTGATTGTACTGATCCATCATCAAATTTACGACCAATCAATCGTTTCG 27683
Query 282687 CATCAAAAAT 282696
|||| ||||
Sbjct 27682 CATCTGAAAT 27673
Score = 125 bits (138), Expect = 5e-23
Identities = 181/253 (72%), Gaps = 2/253 (1%)
Strand=Plus/Minus
Query 281793 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 281852
||||||| ||||||| ||| ||| |||| ||| ||| ||| |||| ||| || ||||
Sbjct 28869 CTTCATCTGGATTAATGCTTTTATTCAGTTCTTTGCCAGAGAAGAAATCTGATAGGAGTT 28810
Query 281853 GTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 281911
||| ||| || |||||||| | |||||| || ||||||||||| ||||| || || | |
Sbjct 28809 -TCTGTACTTTCGGAATACGCGTTGATCCACCTACTAATACAATATCATGAACTTGAGCT 28751
Query 281912 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAG 281971
||||||| || | || || |||| ||||| || || | | | | |||||
Sbjct 28750 TTATCCATCTTCGCGTCACGCAATGCTTTCTCAACCGGATCCATAGTTGAGCGGAACAAA 28691
Query 281972 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 282031
|| | ||| | ||||| || ||| | ||||| || | | |||| ||||| |||
Sbjct 28690 TCAGCACATAACTCTTCAAAACGAGCACGAGTAATGTTGGTGTAAAAATCGATTCCCTCG 28631
Query 282032 AACAAAGAATCAA 282044
|||||||||||||
Sbjct 28630 AACAAAGAATCAA 28618
Score = 123 bits (136), Expect = 2e-22
Identities = 113/143 (79%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|||||||| ||||||||||||| ||||||||||||||| || || || |||| | |||
Sbjct 22796 TTTTTATCTAGACCATACGCAATAGCAGCAGCAGTTGGCTCGTTGATGATTCGAAGGACA 22737
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| | |||| ||| || |||||||| || ||||||| ||| |||||||| |||||
Sbjct 22736 TTCAAGCCAGATATTGCACCCGCATCTTTGGTTGCTTGTCGTTGAGAATCGTTGAAATAC 22677
Query 282452 GCAGGAACAGTAATAACGGCATC 282474
|| || ||||| | ||||||||
Sbjct 22676 GCTGGCACAGTTACTACGGCATC 22654
Score = 102 bits (112), Expect = 6e-16
Identities = 140/193 (73%), Gaps = 7/193 (4%)
Strand=Plus/Minus
Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG--AATATTGCT 282560
||||||| |||||||| | |||| ||| ||||| |||| |||||| | ||| || |
Sbjct 22319 GCTGTTTCCTTCATTTTTCCCAAAACCATAGATGATATTTCTTCTGGTGTGAATGTT--T 22262
Query 282561 TGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA---TTAATAACTT 282617
| | |||| || ||| ||||| || | ||||| |||| || || |||||||
Sbjct 22261 TTGTTTCACCTTTATACTCTACTTGAACCTTCGGTTTGCCACCATCAGCATTGATAACTT 22202
Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 282677
| || ||||||| ||||||||||| || || | | |||| ||| | |||||| || |
Sbjct 22201 TGAAGGGCCAATGCTTCATATCTGACTGTACCGCTGGATCATCAAATTTTCTACCGATCA 22142
Query 282678 ATCGTTTTGCATC 282690
||||||||||||
Sbjct 22141 GTCGTTTTGCATC 22129
Score = 89.7 bits (98), Expect = 4e-12
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749
|||||| ||||||| || || | |||| | |||| ||| |||||||| ||||| ||
Sbjct 27423 CAAAAACAGTATTGTGCGGGTTCATTGCAACCTGATTTTTAGCTGCATCACCAATAAGGC 27364
Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796
|||| || || ||||||| ||||||||||| ||||| || ||||||
Sbjct 27363 GTTCAGTGTCGGTAAATGCCACATATGATGGCGTTGTTCGGTTACCT 27317
>seq4886
Length=3728
Score = 174 bits (192), Expect = 1e-37
Identities = 176/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382
||| ||| || ||||| || ||||| |||| ||| ||||| ||||||||||| || ||
Sbjct 2178 TTGCCTTCCTTCTTATCCAGCCCATAAGCAATAGCGGCAGCTGTTGGTTCATTGATGATA 2237
Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442
| | |||||| || || ||||| | |||||||||||||||||||| | ||||| |||
Sbjct 2238 CGGACAACATTGAGGCCGGCAATAGTACCTGCATCTTTAGTGGCTTGGCGTTGTGCATCA 2297
Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502
||||| || ||||| || || | ||| |||| | | ||||||||||||| ||| ||
Sbjct 2298 TTAAAGTAAGCAGGTACTGTGACAACTGCATGTTTCACTTCTTTTCCAAGATATGCTTCC 2357
Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551
|| ||| ||||||||||| | || ||| | |||||||| ||| ||||
Sbjct 2358 GCAATTTCTTTCATTTTACCGAGAACCATCGCTGAAATTTCTTCAGGAG 2406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3738397916964672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |