Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3 201 8e-46 seq4886 174 1e-37 >seq3 Length=46552 Score = 201 bits (222), Expect = 8e-46 Identities = 268/370 (72%), Gaps = 7/370 (2%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || | |||||| |||| ||| || || ||||||||||| ||||||| ||| ||| Sbjct 28040 TTCTTGTCCAAACCATAGGCAATAGCGGCTGCTGTTGGTTCATTGATAATTCGCAAGACA 27981 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || |||||||||||| || | |||||| || ||||||| ||||| || || ||||| Sbjct 27980 TTCAGACCAGCAATTGCACCGGAATCTTTCGTTGCTTGTCGCTGTGAGTCATTGAAATAC 27921 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 ||||| || || || |||||||| | || | | |||| | | || || |||| Sbjct 27920 GCAGGGACTGTGATGACGGCATCCTTGACCGCATGACCAAGAAATGCTTCAGCAGTTTCC 27861 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA--GAATATTGCTTGGATTCAT 282569 ||||||||| |||| |||||||||||||| ||||||| ||| || || | || Sbjct 27860 TTCATTTTAACCAAAACCATTGATGAAATTTCTTCTGGAGTGAAGGTT--TTCGTCTCGC 27803 Query 282570 TTTGATATGATACTTCAAAATATGGTTTA---TTACCAACATTAATAACTTTAAATGGCC 282626 | ||| || | | | ||||||| |||| |||| |||||||| ||||||| Sbjct 27802 CCTTGTATTCAACCTGCACTTTTGGTTTACCGCCACCAGCATTTATAACTTTGAATGGCC 27743 Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686 ||| ||||||||||||||| || | |||| ||| | | |||||| |||||||| | Sbjct 27742 AATGTTTCATATCTGATTGTACTGATCCATCATCAAATTTACGACCAATCAATCGTTTCG 27683 Query 282687 CATCAAAAAT 282696 |||| |||| Sbjct 27682 CATCTGAAAT 27673 Score = 125 bits (138), Expect = 5e-23 Identities = 181/253 (72%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 281793 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 281852 ||||||| ||||||| ||| ||| |||| ||| ||| ||| |||| ||| || |||| Sbjct 28869 CTTCATCTGGATTAATGCTTTTATTCAGTTCTTTGCCAGAGAAGAAATCTGATAGGAGTT 28810 Query 281853 GTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 281911 ||| ||| || |||||||| | |||||| || ||||||||||| ||||| || || | | Sbjct 28809 -TCTGTACTTTCGGAATACGCGTTGATCCACCTACTAATACAATATCATGAACTTGAGCT 28751 Query 281912 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAG 281971 ||||||| || | || || |||| ||||| || || | | | | ||||| Sbjct 28750 TTATCCATCTTCGCGTCACGCAATGCTTTCTCAACCGGATCCATAGTTGAGCGGAACAAA 28691 Query 281972 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 282031 || | ||| | ||||| || ||| | ||||| || | | |||| ||||| ||| Sbjct 28690 TCAGCACATAACTCTTCAAAACGAGCACGAGTAATGTTGGTGTAAAAATCGATTCCCTCG 28631 Query 282032 AACAAAGAATCAA 282044 ||||||||||||| Sbjct 28630 AACAAAGAATCAA 28618 Score = 123 bits (136), Expect = 2e-22 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| ||||||||||||| ||||||||||||||| || || || |||| | ||| Sbjct 22796 TTTTTATCTAGACCATACGCAATAGCAGCAGCAGTTGGCTCGTTGATGATTCGAAGGACA 22737 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | |||| ||| || |||||||| || ||||||| ||| |||||||| ||||| Sbjct 22736 TTCAAGCCAGATATTGCACCCGCATCTTTGGTTGCTTGTCGTTGAGAATCGTTGAAATAC 22677 Query 282452 GCAGGAACAGTAATAACGGCATC 282474 || || ||||| | |||||||| Sbjct 22676 GCTGGCACAGTTACTACGGCATC 22654 Score = 102 bits (112), Expect = 6e-16 Identities = 140/193 (73%), Gaps = 7/193 (4%) Strand=Plus/Minus Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG--AATATTGCT 282560 ||||||| |||||||| | |||| ||| ||||| |||| |||||| | ||| || | Sbjct 22319 GCTGTTTCCTTCATTTTTCCCAAAACCATAGATGATATTTCTTCTGGTGTGAATGTT--T 22262 Query 282561 TGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA---TTAATAACTT 282617 | | |||| || ||| ||||| || | ||||| |||| || || ||||||| Sbjct 22261 TTGTTTCACCTTTATACTCTACTTGAACCTTCGGTTTGCCACCATCAGCATTGATAACTT 22202 Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 282677 | || ||||||| ||||||||||| || || | | |||| ||| | |||||| || | Sbjct 22201 TGAAGGGCCAATGCTTCATATCTGACTGTACCGCTGGATCATCAAATTTTCTACCGATCA 22142 Query 282678 ATCGTTTTGCATC 282690 |||||||||||| Sbjct 22141 GTCGTTTTGCATC 22129 Score = 89.7 bits (98), Expect = 4e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| ||||||| || || | |||| | |||| ||| |||||||| ||||| || Sbjct 27423 CAAAAACAGTATTGTGCGGGTTCATTGCAACCTGATTTTTAGCTGCATCACCAATAAGGC 27364 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 |||| || || ||||||| ||||||||||| ||||| || |||||| Sbjct 27363 GTTCAGTGTCGGTAAATGCCACATATGATGGCGTTGTTCGGTTACCT 27317 >seq4886 Length=3728 Score = 174 bits (192), Expect = 1e-37 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 ||| ||| || ||||| || ||||| |||| ||| ||||| ||||||||||| || || Sbjct 2178 TTGCCTTCCTTCTTATCCAGCCCATAAGCAATAGCGGCAGCTGTTGGTTCATTGATGATA 2237 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | | |||||| || || ||||| | |||||||||||||||||||| | ||||| ||| Sbjct 2238 CGGACAACATTGAGGCCGGCAATAGTACCTGCATCTTTAGTGGCTTGGCGTTGTGCATCA 2297 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 ||||| || ||||| || || | ||| |||| | | ||||||||||||| ||| || Sbjct 2298 TTAAAGTAAGCAGGTACTGTGACAACTGCATGTTTCACTTCTTTTCCAAGATATGCTTCC 2357 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551 || ||| ||||||||||| | || ||| | |||||||| ||| |||| Sbjct 2358 GCAATTTCTTTCATTTTACCGAGAACCATCGCTGAAATTTCTTCAGGAG 2406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738397916964672