Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2700 93.3 3e-14 seq21486 91.5 1e-13 >seq2700 Length=5623 Score = 93.3 bits (102), Expect = 3e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||||||||| |||||||||||| | || | ||||||||||| ||| ||| Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | || |||| || | || || ||||| || |||| |||||||| ||||| || Sbjct 604 -GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGT 662 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTT 33753 ||| || ||||| || || ||||||||| Sbjct 663 TAAAGTCTTTACGAAAATTTGCATAGTT 690 >seq21486 Length=1089 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || || || || || || || || || | || |||| ||||||||||||||| Sbjct 186 TCCTTCTGGATATTATAGTCCGACAGCGTACGACCATCCTCCAGTTGTTTTCCGGCAAAG 245 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| ||||| |||||| | || | || || ||||| ||| || || || ||| | Sbjct 246 ATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTT-TGCTTTAACGTT 304 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||| || | ||||| || | ||| || |||||||| ||||| ||||| || Sbjct 305 TTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTAAC 364 Query 33738 AAAGATCTGCAT 33749 || || ||||| Sbjct 365 GAAAATTTGCAT 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328521835530240