Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq2700 93.3 3e-14
seq21486 91.5 1e-13
>seq2700
Length=5623
Score = 93.3 bits (102), Expect = 3e-14
Identities = 111/148 (75%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|| || ||||||||||| |||||||||||| | || | ||||||||||| ||| |||
Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603
Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
| || |||| || | || || ||||| || |||| |||||||| ||||| ||
Sbjct 604 -GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGT 662
Query 33726 TAACGTTTTTACAAAGATCTGCATAGTT 33753
||| || ||||| || || |||||||||
Sbjct 663 TAAAGTCTTTACGAAAATTTGCATAGTT 690
>seq21486
Length=1089
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618
|| || || || || || || || || || || | || |||| |||||||||||||||
Sbjct 186 TCCTTCTGGATATTATAGTCCGACAGCGTACGACCATCCTCCAGTTGTTTTCCGGCAAAG 245
Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678
||||| ||||| |||||| | || | || || ||||| ||| || || || ||| |
Sbjct 246 ATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTT-TGCTTTAACGTT 304
Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737
|| | ||| || | ||||| || | ||| || |||||||| ||||| ||||| ||
Sbjct 305 TTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTAAC 364
Query 33738 AAAGATCTGCAT 33749
|| || |||||
Sbjct 365 GAAAATTTGCAT 376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328521835530240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |