Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq5858 91.5 3e-13
seq21486 87.8 4e-12
>seq5858
Length=3261
Score = 91.5 bits (100), Expect = 3e-13
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|||||| | | || ||||| |||||||| ||||| |||| |||||| ||| |||||
Sbjct 2839 AAAACGTTGAAGGGCAAAACAATCACTTTAGAAGTTGAAACTTCTGATACAATCGAAATT 2898
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATT 206277
|||||| | | ||||||||||||||||||||||
Sbjct 2899 GTAAAGGACAGGATTCAAGAAAAAGAAGGAATT 2931
>seq21486
Length=1089
Score = 87.8 bits (96), Expect = 4e-12
Identities = 145/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCG-AATC 206243
||||| | || || ||||| || || ||||||||||| ||| || || ||| || |
Sbjct 361 AAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTCGGATACCATCGAAAAC 302
Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|||||| ||||||||| || || || || ||| || || || || | |||||
Sbjct 301 GTTAAAGC-AAAGATTCAGGACAAGGAGGGCATTCCACCAGATCAACAGCGATTGATCTT 243
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
|||||||| || |||| ||||| | || || | || || || ||||||| || ||
Sbjct 242 TGCCGGAAAACAACTGGAGGATGGTCGTACGCTGTCGGACTATAATATCCAGAAGGAATC 183
Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390
|| |||||||| ||| | | |||||
Sbjct 182 GACGCTTCACCTGGTTCTTCGTCTTCG 156
Score = 86.0 bits (94), Expect = 1e-11
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|||||| | ||||| ||||| |||||| | ||||| ||| ||||| ||| |||||
Sbjct 1024 AAAACGTTGACAGGCAAAACAATCACTCTAGAAGTTGAAGCCTCTGATACAATCGAAAAT 965
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||||||||| |||||||||||| ||| || || | ||||| |||
Sbjct 964 GTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCGCCAGATCAGCAGCGTCTTATTTTC 905
Query 206305 GCCGG 206309
|| ||
Sbjct 904 GCTGG 900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181132259383712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |