Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5858 91.5 3e-13 seq21486 87.8 4e-12 >seq5858 Length=3261 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||| | | || ||||| |||||||| ||||| |||| |||||| ||| ||||| Sbjct 2839 AAAACGTTGAAGGGCAAAACAATCACTTTAGAAGTTGAAACTTCTGATACAATCGAAATT 2898 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATT 206277 |||||| | | |||||||||||||||||||||| Sbjct 2899 GTAAAGGACAGGATTCAAGAAAAAGAAGGAATT 2931 >seq21486 Length=1089 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCG-AATC 206243 ||||| | || || ||||| || || ||||||||||| ||| || || ||| || | Sbjct 361 AAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTCGGATACCATCGAAAAC 302 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| ||||||||| || || || || ||| || || || || | ||||| Sbjct 301 GTTAAAGC-AAAGATTCAGGACAAGGAGGGCATTCCACCAGATCAACAGCGATTGATCTT 243 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||||| || |||| ||||| | || || | || || || ||||||| || || Sbjct 242 TGCCGGAAAACAACTGGAGGATGGTCGTACGCTGTCGGACTATAATATCCAGAAGGAATC 183 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||||| ||| | | ||||| Sbjct 182 GACGCTTCACCTGGTTCTTCGTCTTCG 156 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||| | ||||| ||||| |||||| | ||||| ||| ||||| ||| ||||| Sbjct 1024 AAAACGTTGACAGGCAAAACAATCACTCTAGAAGTTGAAGCCTCTGATACAATCGAAAAT 965 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||||||||| |||||||||||| ||| || || | ||||| ||| Sbjct 964 GTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCGCCAGATCAGCAGCGTCTTATTTTC 905 Query 206305 GCCGG 206309 || || Sbjct 904 GCTGG 900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181132259383712