Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq21486 98.7 9e-16 >seq21486 Length=1089 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || || || ||||| || ||||| ||| || || ||||| |||| | Sbjct 183 GATTCCTTCTGGATATTATAGTCCGACAGCGTACGACCATCCTCCAGTTGTTTTCCGGCA 242 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | |||||||||||||| || ||||| || || || ||| ||| ||| | Sbjct 243 AAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTTGCTTTAACG 302 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | | ||||||||| | ||| | |||||||| || | |||||| Sbjct 303 TTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTA 362 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 363 ACGAAAATTTGCAT 376 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGT 132052 || |||||||| ||||| ||||| ||||| |||||||| |||||| ||||| | Sbjct 593 ATAAGACGCTGCTGATCAGGAGGGATGCCCTCTTTATCCTGAATTTTGGCTTTCACATTC 652 Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATG 132112 || | ||||| | | || ||||| | ||| | ||||| ||||| || || |||| | Sbjct 653 TCGATCGTATCCGAAGCTTCTACTTCCAGCGTTATGGTTTTGCCAGTAAGCGTCTTTACG 712 Query 132113 AAAATCTGCATG 132124 |||||||||||| Sbjct 713 AAAATCTGCATG 724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476340294193920