Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq21486 134 1e-26 seq2700 118 1e-21 seq13328 95.1 1e-14 seq5858 82.4 8e-11 >seq21486 Length=1089 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563 || ||||| ||||| |||||||| || || || ||||| | || || | || || || Sbjct 168 ACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCG-TACGACCATCCTC 226 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 || ||||| || ||||| ||||| ||||| ||||| || || ||||| || || || || Sbjct 227 CAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTGTCCTG 286 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 ||| ||| ||| || || | || || || | ||||| || | || |||||||| Sbjct 287 AATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGTTTT 346 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||| ||||||||||||||||||||||||||| Sbjct 347 ACCCGTTAAAGTTTTAACGAAAATTTGCATT 377 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 ||||||||||| | |||||||||||| || || ||||| ||||| || |||||||| | Sbjct 584 CCTGCAAAAATAAGACGCTGCTGATCAGGAGGGATGCCCTCTTTATCCTGAATTTTGGCT 643 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || || | ||| || || || || |||||||| || || | Sbjct 644 TTCACATTCTCGATCGTATCCGAAGCTTCTACTTCCAGCGTTATGGTTTTGCCAGTAAGC 703 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || |||||||| ||||| Sbjct 704 GTCTTTACGAAAATCTGCAT 723 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || ||||| | |||||||||||| ||||| || |||||||| |||||||| || Sbjct 900 CCAGCGAAAATAAGACGCTGCTGATCTGGCGGAATTCCTTCTTTGTCTTGAATCTTGGCC 959 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || ||||| || ||||| || || || Sbjct 960 TTTACATTTTCGATTGTATCAGAGGCTTCAACTTCTAGAGTGATTGTTTTGCCTGTCAAC 1019 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || || |||||||| Sbjct 1020 GTTTTTACAAAGATTTGCAT 1039 >seq2700 Length=5623 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || |||||||||||||| ||||||||||| || |||||||||||||| || ||||| || Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | || || || ||||| || || || || || || ||||| ||| Sbjct 604 GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGTT 663 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 ||||| || |||||||||||||| Sbjct 664 AAAGTCTTTACGAAAATTTGCAT 686 >seq13328 Length=1679 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || ||||||||||| | || |||||||| || || || ||||| || || |||||||| Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | || || |||||||| || || || ||||| || ||||| || Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTACCAGTC 70 Query 134691 AAAGTTTTAACGAAAATTTGCATTTTG 134717 || ||||| ||||| |||||||| ||| Sbjct 69 AATGTTTTCACGAATATTTGCATCTTG 43 >seq5858 Length=3261 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||||||||| ||||||||||| || | || || || || || || |||||| | Sbjct 2556 CCAGCAAAAATCAAGCGCTGCTGATCCGGTGAAATACCCTCCTTATCCTGTATTTTTGCT 2497 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||| |||| ||||| || ||| |||| |||| || || Sbjct 2496 TTAACATTCTCAATCGTGTCTGACGCCTCCACTTCAAGAATAATCTTTTTCCCTAGCAAT 2437 Query 134694 GTTTTAACGAAAATTTGCATTTT 134716 ||||| ||||| |||||||| || Sbjct 2436 GTTTTTACGAAGATTTGCATATT 2414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505111131549440