Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq11331 98.7 1e-15
seq7536 98.7 1e-15
>seq11331
Length=1923
Score = 98.7 bits (108), Expect = 1e-15
Identities = 101/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140
||| ||||| ||||| || || || ||||| ||||| || || || | ||||||||||||
Sbjct 192 AAGGATAAAAGCATCAGCTAAGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATT 133
Query 69141 TGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200
|| | ||| ||||| || | ||||||||||| ||| |||| |||||| | ||||
Sbjct 132 AGATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAACTTTATTCAAATTTTT 73
Query 69201 GACTACTACTTT 69212
|| ||||||||
Sbjct 72 AACCACTACTTT 61
>seq7536
Length=2681
Score = 98.7 bits (108), Expect = 1e-15
Identities = 101/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140
||| ||||| ||||| || | |||||||| ||||| || || || | |||||| |||||
Sbjct 1588 AAGGATAAAAGCATCAGCTAGGCCCTGAACACCAATGCCAATTGGACGATGTCTATTATT 1647
Query 69141 TGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200
|| | ||| ||||| || | ||||||||||| ||| ||||||||||| | ||||
Sbjct 1648 AGATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTC 1707
Query 69201 GACTACTACTTT 69212
|| ||||||||
Sbjct 1708 AACCACTACTTT 1719
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686518361038080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |