Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq21486 152 6e-32 seq13328 118 1e-21 seq2700 105 8e-18 seq9851 104 3e-17 >seq21486 Length=1089 Score = 152 bits (168), Expect = 6e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || | || || || || || || | || || ||| | Sbjct 377 AATGCAAATTTTCGTTAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTC 318 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | ||| | || || || ||||||||||||||||| ||||| ||||| || Sbjct 317 GGATACCATCGAAAACGTTAAAGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCA 258 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| | || ||||| || || ||||| ||||||| |||||| || | |||||||| Sbjct 257 ACAGCGATTGATCTTTGCCGGAAAACAACTGGAGGATGGTCGTACGCTGTCGGACTATAA 198 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | |||| |||||||| || ||||| || || | ||||||||||| ||| Sbjct 197 TATCCAGAAGGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGGA 149 Score = 122 bits (134), Expect = 1e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || ||| | || ||||| || || ||||| || ||||| | | Sbjct 1039 ATGCAAATCTTTGTAAAAACGTTGACAGGCAAAACAATCACTCTAGAAGTTGAAGCCTCT 980 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || ||||| ||||| || |||||||| ||||| ||| Sbjct 979 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCGCCAGATCAG 920 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 |||||||| ||||| ||||||| || Sbjct 919 CAGCGTCTTATTTTCGCTGGTATGC 895 Score = 102 bits (112), Expect = 9e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||||||||| ||||| || || || || || || || | Sbjct 723 ATGCAGATTTTCGTAAAGACGCTTACTGGCAAAACCATAACGCTGGAAGTAGAAGCTTCG 664 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| |||| || ||||||||||| || ||||| || ||||| || ||| Sbjct 663 GATACGATCGAGAATGTGAAAGCCAAAATTCAGGATAAAGAGGGCATCCCTCCTGATCAG 604 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 |||||||| |||||||| ||| Sbjct 603 CAGCGTCTTATTTTTGCAGGT 583 >seq13328 Length=1679 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || | || || ||||| ||||| |||||||| || || | Sbjct 47 ATGCAAATATTCGTGAAAACATTGACTGGTAAGACGATTACCCTTGAGGTAGAATCGTCT 106 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| ||||||||||||||||||| ||||| || || || || || ||| Sbjct 107 GATACCATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAAGGTATCCCACCTGATCAG 166 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 || || || |||||||| ||||| Sbjct 167 CAACGACTTATTTTTGCAGGTAA 189 >seq2700 Length=5623 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | || || ||||| || || |||||||| || || Sbjct 686 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAGACGATCACACTTGAGGTCGAATCCTCG 627 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || || || ||||||||||| || || || |||||||| ||| Sbjct 626 GATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCCAGATCAG 567 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 ||||| | |||||||| ||||| Sbjct 566 CAGCGATTGATTTTTGCAGGTAA 544 >seq9851 Length=2160 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || ||||| || || || || || | || || || || | Sbjct 1472 ATGCAAATCTTTGTAAAAACTCTTACTGGTAAAACGATCACATTCGAAGTAGAAGCATCT 1413 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||||| ||||| |||||||| ||||||||||| ||||| || Sbjct 1412 GATACCATCGAGAATGTTAAGGCGAAAATCCAGGACAAAGAGGGAATTCCACCAGATCAA 1353 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| | || || ||||||| Sbjct 1352 CAGCGATTGATCTTCGCTGGTA 1331 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| | ||||| || ||||| ||||| || |||||||| ||||| || Sbjct 1025 TGATAAAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCGCCAGATCA 966 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGC 27550 ||||||||| ||||| ||||||| || Sbjct 965 GCAGCGTCTTATTTTCGCTGGTATGC 940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569986235568640