Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq21486 152 6e-32
seq13328 118 1e-21
seq2700 105 8e-18
seq9851 104 3e-17
>seq21486
Length=1089
Score = 152 bits (168), Expect = 6e-32
Identities = 171/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || || || | || || || || || || | || || ||| |
Sbjct 377 AATGCAAATTTTCGTTAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTC 318
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| ||| | ||| | || || || ||||||||||||||||| ||||| ||||| ||
Sbjct 317 GGATACCATCGAAAACGTTAAAGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCA 258
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||| | || ||||| || || ||||| ||||||| |||||| || | ||||||||
Sbjct 257 ACAGCGATTGATCTTTGCCGGAAAACAACTGGAGGATGGTCGTACGCTGTCGGACTATAA 198
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| |||| |||||||| || ||||| || || | ||||||||||| |||
Sbjct 197 TATCCAGAAGGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGGA 149
Score = 122 bits (134), Expect = 1e-22
Identities = 114/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||| || ||| | || ||||| || || ||||| || ||||| | |
Sbjct 1039 ATGCAAATCTTTGTAAAAACGTTGACAGGCAAAACAATCACTCTAGAAGTTGAAGCCTCT 980
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | |||| | ||||| || ||||| ||||| || |||||||| ||||| |||
Sbjct 979 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCGCCAGATCAG 920
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550
|||||||| ||||| ||||||| ||
Sbjct 919 CAGCGTCTTATTTTCGCTGGTATGC 895
Score = 102 bits (112), Expect = 9e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||||||||| ||||| || || || || || || || |
Sbjct 723 ATGCAGATTTTCGTAAAGACGCTTACTGGCAAAACCATAACGCTGGAAGTAGAAGCTTCG 664
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| |||| || ||||||||||| || ||||| || ||||| || |||
Sbjct 663 GATACGATCGAGAATGTGAAAGCCAAAATTCAGGATAAAGAGGGCATCCCTCCTGATCAG 604
Query 27526 CAGCGTCTAATTTTTGCTGGT 27546
|||||||| |||||||| |||
Sbjct 603 CAGCGTCTTATTTTTGCAGGT 583
>seq13328
Length=1679
Score = 118 bits (130), Expect = 1e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || || || | || || ||||| ||||| |||||||| || || |
Sbjct 47 ATGCAAATATTCGTGAAAACATTGACTGGTAAGACGATTACCCTTGAGGTAGAATCGTCT 106
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| ||||||||||||||||||| ||||| || || || || || |||
Sbjct 107 GATACCATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAAGGTATCCCACCTGATCAG 166
Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548
|| || || |||||||| |||||
Sbjct 167 CAACGACTTATTTTTGCAGGTAA 189
>seq2700
Length=5623
Score = 105 bits (116), Expect = 8e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || ||||| | || || ||||| || || |||||||| || ||
Sbjct 686 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAGACGATCACACTTGAGGTCGAATCCTCG 627
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| |||| | || || || ||||||||||| || || || |||||||| |||
Sbjct 626 GATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCCAGATCAG 567
Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548
||||| | |||||||| |||||
Sbjct 566 CAGCGATTGATTTTTGCAGGTAA 544
>seq9851
Length=2160
Score = 104 bits (114), Expect = 3e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||| || || ||||| || || || || || | || || || || |
Sbjct 1472 ATGCAAATCTTTGTAAAAACTCTTACTGGTAAAACGATCACATTCGAAGTAGAAGCATCT 1413
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| | ||||| ||||| |||||||| ||||||||||| ||||| ||
Sbjct 1412 GATACCATCGAGAATGTTAAGGCGAAAATCCAGGACAAAGAGGGAATTCCACCAGATCAA 1353
Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547
||||| | || || |||||||
Sbjct 1352 CAGCGATTGATCTTCGCTGGTA 1331
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | |||| | ||||| || ||||| ||||| || |||||||| ||||| ||
Sbjct 1025 TGATAAAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCGCCAGATCA 966
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGC 27550
||||||||| ||||| ||||||| ||
Sbjct 965 GCAGCGTCTTATTTTCGCTGGTATGC 940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569986235568640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |