Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq21486 98.7 9e-16 seq39641 91.5 1e-13 seq2700 87.8 2e-12 seq9851 82.4 7e-11 >seq21486 Length=1089 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||| | || || || | || || | |||||||| | || Sbjct 376 ATGCAAATTTTCGTTAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTCG 317 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||| ||||| ||||| || ||||| ||||| |||||| Sbjct 316 GATACCATCGAAAACGTTAAAGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCAA 257 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||||| |||||| |||| || || || | || || || || Sbjct 256 CAGCGATTGATCTTTGCCGGAAAACAACTGGAGGATGGTCGTACGCTGTCGGACTATAAT 197 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| ||||| | || ||||| | ||| | || || || Sbjct 196 ATCCAGAAGGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGG 150 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| |||| ||||| | || ||||| ||||| ||| | || Sbjct 1039 ATGCAAATCTTTGTAAAAACGTTGACAGGCAAAACAATCACTCTAGAAGTTGAAGCCTCT 980 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||||||||||||||| || || || ||||| Sbjct 979 GATACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCGCCAGATCAG 920 Query 27108 CAGCGTTTAATATACGCCGG 27127 |||||| | || | ||| || Sbjct 919 CAGCGTCTTATTTTCGCTGG 900 >seq39641 Length=587 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||||||||| || || || | || || | ||||| ||| | || Sbjct 187 ATGCAAATTTTTGTAAAAACTCTTACTGGTAAAACGATCACATTGGAAGTAGAAGCATCT 246 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| ||||| || ||||||||||| || ||||| |||||| Sbjct 247 GATACTATCGAGAATGTGAAAGCGAAAATCCAGGACAAAGAAGGAATTCCACCGGATCAA 306 Query 27108 CAGCGTTTAATATACGCCGG 27127 ||||| || || | ||| || Sbjct 307 CAGCGATTGATCTTCGCTGG 326 >seq2700 Length=5623 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| ||| | || || ||| | || || ||||| || ||| | || Sbjct 686 ATGCAAATTTTCGTAAAGACTTTAACTGGTAAGACGATCACACTTGAGGTCGAATCCTCG 627 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | || ||| || ||||| ||||||||||||||||| || ||||| Sbjct 626 GATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCCAGATCAG 567 Query 27108 CAGCGTTTAAT 27118 ||||| || || Sbjct 566 CAGCGATTGAT 556 >seq9851 Length=2160 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||||||||| || || || | || || | ||||| ||| | || Sbjct 1472 ATGCAAATCTTTGTAAAAACTCTTACTGGTAAAACGATCACATTCGAAGTAGAAGCATCT 1413 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || ||||| || |||||||| || || ||||| |||||| Sbjct 1412 GATACCATCGAGAATGTTAAGGCGAAAATCCAGGACAAAGAGGGAATTCCACCAGATCAA 1353 Query 27108 CAGCGTTTAATATACGCCGG 27127 ||||| || || | ||| || Sbjct 1352 CAGCGATTGATCTTCGCTGG 1333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434671192381440