Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq21486 125 2e-23 seq39641 100 7e-16 seq9851 95.1 3e-14 seq2700 91.5 3e-13 >seq21486 Length=1089 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || |||||||| || || || || ||||| ||||| |||| || || Sbjct 156 CGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTA 215 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| ||||| || || || || ||||| | || ||||| || || |||| || Sbjct 216 CGACCATCCTCCAGTTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCC 275 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| |||||| ||| |||||||||||||| || || || || || | Sbjct 276 TCCTTGTCCTGAATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAAC 335 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||| | ||| || || || | |||||| Sbjct 336 GTTATGGTTTTACCCGTTAAAGTTTTAACGAAAATTTGCATT 377 >seq39641 Length=587 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| | || ||||| || || |||| |||||| ||||||||||| || | Sbjct 326 CCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTCGCT 267 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| || ||||| || ||||| ||| || || | |||||||| || || || ||| Sbjct 266 TTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAAGA 207 Query 211095 GTCTTTACAAACACCTGCAT 211114 || |||||||| | ||||| Sbjct 206 GTTTTTACAAAAATTTGCAT 187 >seq9851 Length=2160 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| | || ||||| || || |||| ||| || ||||||||||| || Sbjct 1333 CCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCGCC 1392 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || |||||||| ||||| ||| || |||| |||||||| || || || ||| Sbjct 1393 TTAACATTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAAGA 1452 Query 211095 GTCTTTACAAACACCTGCAT 211114 || |||||||| | ||||| Sbjct 1453 GTTTTTACAAAGATTTGCAT 1472 >seq2700 Length=5623 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || ||||| || || | || || || || ||||| | ||||| |||||||| ||||| Sbjct 544 TTACCTGCAAAAATCAATCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGAATCTTC 603 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || ||||| || || || ||| ||| ||||| || ||||||||||| || || Sbjct 604 GCTTTTACATTTTCAATCGTATCCGAGGATTCGACCTCAAGTGTGATCGTCTTACCAGTT 663 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||||||| || | ||||| Sbjct 664 AAAGTCTTTACGAAAATTTGCAT 686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158476666453280