Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq21486 102 6e-17 seq2700 93.3 3e-14 >seq21486 Length=1089 Score = 102 bits (112), Expect = 6e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||||||||| | ||||| ||||| || || | ||||| || | | Sbjct 377 AATGCAAATTTTCGTTAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTC 318 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || | |||| | ||| ||| ||| ||||| || || | || |||||||| Sbjct 317 GGATACCATCGAAAACGTTAAAGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCA 258 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 |||||| || || |||||||| ||||||||||| || Sbjct 257 ACAGCGATTGATCTTTGCCGGAAAACAACTGGAGGA 222 >seq2700 Length=5623 Score = 93.3 bits (102), Expect = 3e-14 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 23606 TTAAA--ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGA 23663 ||||| ||||| |||||||| || || | || || || |||||||| || || || || Sbjct 693 TTAAACTATGCAAATTTTCGTAAAGACTTTAACTGGTAAGACGATCACACTTGAGGTCGA 634 Query 23664 CTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723 ||| |||| || |||||| ||||| || ||| ||||||||||| |||| || Sbjct 633 ATCCTCGGATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCC 574 Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAA 23753 |||||| ||||| || || ||||| || || Sbjct 573 AGATCAGCAGCGATTGATTTTTGCAGGTAA 544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337822278459776