Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq21486 102 6e-17
seq2700 93.3 3e-14
>seq21486
Length=1089
Score = 102 bits (112), Expect = 6e-17
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| |||||||||||||| | ||||| ||||| || || | ||||| || | |
Sbjct 377 AATGCAAATTTTCGTTAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTC 318
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||| || | |||| | ||| ||| ||| ||||| || || | || ||||||||
Sbjct 317 GGATACCATCGAAAACGTTAAAGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCA 258
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765
|||||| || || |||||||| ||||||||||| ||
Sbjct 257 ACAGCGATTGATCTTTGCCGGAAAACAACTGGAGGA 222
>seq2700
Length=5623
Score = 93.3 bits (102), Expect = 3e-14
Identities = 111/150 (74%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 23606 TTAAA--ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGA 23663
||||| ||||| |||||||| || || | || || || |||||||| || || || ||
Sbjct 693 TTAAACTATGCAAATTTTCGTAAAGACTTTAACTGGTAAGACGATCACACTTGAGGTCGA 634
Query 23664 CTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCC 23723
||| |||| || |||||| ||||| || ||| ||||||||||| |||| ||
Sbjct 633 ATCCTCGGATACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCC 574
Query 23724 AGATCAACAGCGTTTAATATTTGCCGGCAA 23753
|||||| ||||| || || ||||| || ||
Sbjct 573 AGATCAGCAGCGATTGATTTTTGCAGGTAA 544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337822278459776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |