Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq39641 98.7 2e-15 seq9851 95.1 3e-14 seq13328 93.3 1e-13 seq196 93.3 1e-13 >seq39641 Length=587 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| | ||| ||||| || || ||||| ||||| ||||| ||||| ||| || Sbjct 326 CCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGAT-TTTCGC 268 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 |||||| ||||| || || || | ||| || || || |||||||| || || || | Sbjct 267 TTTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAAG 208 Query 225693 AGTTTTTATGAACACTTGCAT 225713 |||||||| || | |||||| Sbjct 207 AGTTTTTACAAAAATTTGCAT 187 >seq9851 Length=2160 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 ||||||||||| | ||| ||||| || || ||||| || || ||||| ||||| || | Sbjct 1333 CCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCGCC 1392 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| |||||||| || || | ||| || || || |||||||| || || || | | Sbjct 1393 TTAACATTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAAGA 1452 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||||| || | |||||| Sbjct 1453 GTTTTTACAAAGATTTGCAT 1472 >seq13328 Length=1679 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || ||||||||||| || || || || ||||||||||| || || || || Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| || ||||| || || | ||| || || | || |||||||| || ||| Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTACCAGTC 70 Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| | ||| | |||||| || Sbjct 69 AATGTTTTCACGAATATTTGCATCTT 44 >seq196 Length=18737 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||||||||| ||||| || || || || ||||| || ||||| |||||||||||||| || Sbjct 14726 GAATATTTGCCCATCTGTGATTGAAATCACATTGGTGGGGATGTAAGCAGAAACATCGCC 14667 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 ||||| ||||| | ||| |||| || || | ||| ||||| ||| Sbjct 14666 AGCTTGAGTTTCAATAACTGGTAGTGCCGTCAATGAGCCACCTCCA 14621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191836419397568