Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq39641 98.7 2e-15
seq9851 95.1 3e-14
seq13328 93.3 1e-13
seq196 93.3 1e-13
>seq39641
Length=587
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
||||||||||| | ||| ||||| || || ||||| ||||| ||||| ||||| ||| ||
Sbjct 326 CCAGCGAAGATCAATCGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGAT-TTTCGC 268
Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692
|||||| ||||| || || || | ||| || || || |||||||| || || || |
Sbjct 267 TTTCACATTCTCGATAGTATCAGATGCTTCTACTTCCAATGTGATCGTTTTACCAGTAAG 208
Query 225693 AGTTTTTATGAACACTTGCAT 225713
|||||||| || | ||||||
Sbjct 207 AGTTTTTACAAAAATTTGCAT 187
>seq9851
Length=2160
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633
||||||||||| | ||| ||||| || || ||||| || || ||||| ||||| || |
Sbjct 1333 CCAGCGAAGATCAATCGCTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGGATTTTCGCC 1392
Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693
|| ||| |||||||| || || | ||| || || || |||||||| || || || | |
Sbjct 1393 TTAACATTCTCGATGGTATCAGATGCTTCTACTTCGAATGTGATCGTTTTACCAGTAAGA 1452
Query 225694 GTTTTTATGAACACTTGCAT 225713
||||||| || | ||||||
Sbjct 1453 GTTTTTACAAAGATTTGCAT 1472
>seq13328
Length=1679
Score = 93.3 bits (102), Expect = 1e-13
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| || || || ||||||||||| || || || || ||||||||||| || || || ||
Sbjct 189 TTACCTGCAAAAATAAGTCGTTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTA 130
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||||||| || ||||| || || | ||| || || | || |||||||| || |||
Sbjct 129 GCCTTCACATTCTCAATGGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTACCAGTC 70
Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716
|| ||||| | ||| | |||||| ||
Sbjct 69 AATGTTTTCACGAATATTTGCATCTT 44
>seq196
Length=18737
Score = 93.3 bits (102), Expect = 1e-13
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||||||||| ||||| || || || || ||||| || ||||| |||||||||||||| ||
Sbjct 14726 GAATATTTGCCCATCTGTGATTGAAATCACATTGGTGGGGATGTAAGCAGAAACATCGCC 14667
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575
||||| ||||| | ||| |||| || || | ||| ||||| |||
Sbjct 14666 AGCTTGAGTTTCAATAACTGGTAGTGCCGTCAATGAGCCACCTCCA 14621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1191836419397568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |