Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq7536 104 3e-17 seq11331 98.7 1e-15 seq3467 93.3 6e-14 >seq7536 Length=2681 Score = 104 bits (114), Expect = 3e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 76084 AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 76143 ||| ||||| ||||| ||||| |||||||| ||||| ||||| || | |||||| ||||| Sbjct 1588 AAGGATAAAAGCATCAGCTAGGCCCTGAACACCAATGCCAATTGGACGATGTCTATTATT 1647 Query 76144 GGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCT 76203 || ||| ||||| || | || |||||||| ||| ||||||||||| | |||| Sbjct 1648 AGATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTC 1707 Query 76204 GACAACTACTTT 76215 || |||||||| Sbjct 1708 AACCACTACTTT 1719 >seq11331 Length=1923 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 76084 AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 76143 ||| ||||| ||||| |||| || ||||| ||||| ||||| || | |||||||||||| Sbjct 192 AAGGATAAAAGCATCAGCTAAGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATT 133 Query 76144 GGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCT 76203 || ||| ||||| || | || |||||||| ||| |||| |||||| | |||| | Sbjct 132 AGATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAACTTTATTCAAATTTTT 73 Query 76204 GACAACTACTTT 76215 || |||||||| Sbjct 72 AACCACTACTTT 61 >seq3467 Length=4753 Score = 93.3 bits (102), Expect = 6e-14 Identities = 157/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 76497 TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGAC 76556 |||| || ||||| || || |||||| | ||||| ||| ||||| || |||| Sbjct 4459 TTTCTTACTGTGTGTACAATTTCTCAAATGTCTTGCCCCAGGAATCTTCCAACCCGGGAC 4400 Query 76557 ATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGAT 76616 ||||| |||||||| |||||||| ||| || || || | ||| || |||| Sbjct 4399 ATTCAGCAGGACACATTAATGACCATATTTTATCGTCACGTACGCGCTCCATGAAAAGAT 4340 Query 76617 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTC---TTCATTTCCTGTAT 76673 | |||||||||| | ||| |||| ||| || | |||||| ||||| || || Sbjct 4339 CCGGTATCCATAAACCAAAGAATAAATCACGA---CAACGTTCCAGTTCATCACCCACAT 4283 Query 76674 TCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTC 76719 |||| | || ||||| || || | |||||| | |||||||||||| Sbjct 4282 TCTTCCTCAGTTCTAGAAATTCAAAAATATCCGCATGCCATGGTTC 4237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712529168087040