Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26]
45,472 sequences; 86,175,476 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq7536 104 3e-17
seq11331 98.7 1e-15
seq3467 93.3 6e-14
>seq7536
Length=2681
Score = 104 bits (114), Expect = 3e-17
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 76084 AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 76143
||| ||||| ||||| ||||| |||||||| ||||| ||||| || | |||||| |||||
Sbjct 1588 AAGGATAAAAGCATCAGCTAGGCCCTGAACACCAATGCCAATTGGACGATGTCTATTATT 1647
Query 76144 GGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCT 76203
|| ||| ||||| || | || |||||||| ||| ||||||||||| | ||||
Sbjct 1648 AGATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTC 1707
Query 76204 GACAACTACTTT 76215
|| ||||||||
Sbjct 1708 AACCACTACTTT 1719
>seq11331
Length=1923
Score = 98.7 bits (108), Expect = 1e-15
Identities = 101/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 76084 AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 76143
||| ||||| ||||| |||| || ||||| ||||| ||||| || | ||||||||||||
Sbjct 192 AAGGATAAAAGCATCAGCTAAGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATT 133
Query 76144 GGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCT 76203
|| ||| ||||| || | || |||||||| ||| |||| |||||| | |||| |
Sbjct 132 AGATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAACTTTATTCAAATTTTT 73
Query 76204 GACAACTACTTT 76215
|| ||||||||
Sbjct 72 AACCACTACTTT 61
>seq3467
Length=4753
Score = 93.3 bits (102), Expect = 6e-14
Identities = 157/226 (69%), Gaps = 6/226 (3%)
Strand=Plus/Minus
Query 76497 TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGAC 76556
|||| || ||||| || || |||||| | ||||| ||| ||||| || ||||
Sbjct 4459 TTTCTTACTGTGTGTACAATTTCTCAAATGTCTTGCCCCAGGAATCTTCCAACCCGGGAC 4400
Query 76557 ATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGAT 76616
||||| |||||||| |||||||| ||| || || || | ||| || ||||
Sbjct 4399 ATTCAGCAGGACACATTAATGACCATATTTTATCGTCACGTACGCGCTCCATGAAAAGAT 4340
Query 76617 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTC---TTCATTTCCTGTAT 76673
| |||||||||| | ||| |||| ||| || | |||||| ||||| || ||
Sbjct 4339 CCGGTATCCATAAACCAAAGAATAAATCACGA---CAACGTTCCAGTTCATCACCCACAT 4283
Query 76674 TCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTC 76719
|||| | || ||||| || || | |||||| | ||||||||||||
Sbjct 4282 TCTTCCTCAGTTCTAGAAATTCAAAAATATCCGCATGCCATGGTTC 4237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712529168087040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |