Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq21486 134 3e-26 seq39641 107 5e-18 seq13328 104 6e-17 seq2700 104 6e-17 seq9851 98.7 2e-15 >seq21486 Length=1089 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||| | || || ||||| || || | || ||||| || || Sbjct 373 CAAATTTTCGTTAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTCGGAT 314 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| ||| ||||||||||||||| || || || || || || || || Sbjct 313 ACCATCGAAAACGTTAAAGCAAAGATTCAGGACAAGGAGGGCATTCCACCAGATCAACAG 254 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| ||||||||||| || || ||||| | || || | || ||||| || Sbjct 253 CGATTGATCTTTGCCGGAAAACAACTGGAGGATGGTCGTACGCTGTCGGACTATAATATC 194 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| || || || || ||| Sbjct 193 CAGAAGGAATCGACGCTTCACCTGGTT 167 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | ||||| ||||| ||||| || || || ||| ||| || Sbjct 1036 CAAATCTTTGTAAAAACGTTGACAGGCAAAACAATCACTCTAGAAGTTGAAGCCTCTGAT 977 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||||| |||||||||||||| || || || ||||| Sbjct 976 ACAATCGAAAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCGCCAGATCAGCAG 917 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| ||||| || Sbjct 916 CGTCTTATTTTCGCTGG 900 >seq39641 Length=587 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| || || ||||||||||| | || || ||| || || Sbjct 190 CAAATTTTTGTAAAAACTCTTACTGGTAAAACGATCACATTGGAAGTAGAAGCATCTGAT 249 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || ||| || || ||||||||||||||||| || ||||| || || Sbjct 250 ACTATCGAGAATGTGAAAGCGAAAATCCAGGACAAAGAAGGAATTCCACCGGATCAACAG 309 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | |||||||| || Sbjct 310 CGATTGATCTTCGCTGG 326 >seq13328 Length=1679 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| | || || || ||||| ||||| ||||| ||| || || Sbjct 50 CAAATATTCGTGAAAACATTGACTGGTAAGACGATTACCCTTGAGGTAGAATCGTCTGAT 109 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || || |||||||| || ||||| ||||| || || |||||| Sbjct 110 ACCATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAAGGTATCCCACCTGATCAGCAA 169 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||||||| || || || || Sbjct 170 CGACTTATTTTTGCAGGTAA 189 >seq2700 Length=5623 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || || |||||||| || ||||| ||| ||| || Sbjct 683 CAAATTTTCGTAAAGACTTTAACTGGTAAGACGATCACACTTGAGGTCGAATCCTCGGAT 624 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||||||||||||||||| || ||||| || ||||| Sbjct 623 ACGATTGAAAATGTAAAAGCGAAGATTCAGGACAAAGAAGGCATACCTCCAGATCAGCAG 564 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||| | || || || || || Sbjct 563 CGATTGATTTTTGCAGGTAA 544 >seq9851 Length=2160 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || || ||||||||||| |||| || ||| || || Sbjct 1469 CAAATCTTTGTAAAAACTCTTACTGGTAAAACGATCACATTCGAAGTAGAAGCATCTGAT 1410 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || || || ||||||||||| ||||| || || || || || Sbjct 1409 ACCATCGAGAATGTTAAGGCGAAAATCCAGGACAAAGAGGGAATTCCACCAGATCAACAG 1350 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | |||||||| || Sbjct 1349 CGATTGATCTTCGCTGG 1333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203029894165568