Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1143 86.0 1e-11 seq7011 84.2 5e-11 seq4652 84.2 5e-11 seq541 84.2 5e-11 >seq1143 Length=18056 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 61084 TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAA 61143 ||| |||||| |||||||||||| ||||||| ||||| |||||| | || |||| ||||| Sbjct 8671 TTTATCAAGCCTCAACATCTGAATTGTATGGTAAAGTACAAGAAGTGCCGCAAAAAGAAA 8612 Query 61144 GGACTCCGTTTTATCCTCGTAGCCCGTATGGT 61175 || || || ||||||||| || |||||| Sbjct 8611 CTACACCCTTCTATCCTCGTTCACCTTATGGT 8580 >seq7011 Length=2193 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| ||||||||| |||| ||||||||| Sbjct 1650 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 1591 Query 165769 CCCC 165772 |||| Sbjct 1590 CCCC 1587 >seq4652 Length=4141 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 |||||||||| |||||||| ||||||||||||||| ||||||||||||||| |||||| Sbjct 309 CTAGCTCAGTTGGTAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGAGTCCCACG 250 Query 165776 ATGGGC 165781 |||| Sbjct 249 GAGGGC 244 >seq541 Length=30130 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 |||||||||| |||||||| ||||||||||||||| ||||||||||||||| |||||| Sbjct 14881 CTAGCTCAGTTGGTAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGAGTCCCACG 14822 Query 165776 ATGGGC 165781 |||| Sbjct 14821 GAGGGC 14816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057549639131090