Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq11 111 2e-19
seq2720 87.8 2e-12
seq187 86.0 7e-12
>seq11
Length=130440
Score = 111 bits (122), Expect = 2e-19
Identities = 103/131 (79%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 53516 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 53575
|| ||||| || || |||| |||||||||||||| || || || | |||||||||||||
Sbjct 103280 AGGATAAAAGCATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 103221
Query 53576 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG 53635
|| ||| ||||| || | ||||||||||| ||| ||||||||||| | |||||
Sbjct 103220 GATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTCTA 103161
Query 53636 ACAATTACTTT 53646
|| ||||||||
Sbjct 103160 ACCATTACTTT 103150
>seq2720
Length=8031
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 53516 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 53575
|| ||||| | || |||| |||||||||||||| || || || | |||||||||||||
Sbjct 5275 AGGATAAAAGTATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 5216
Query 53576 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG 53635
|| ||| | ||| || | ||||||||||| ||| ||||||||||| | ||| |
Sbjct 5215 GATCGTTCCGTTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTTA 5156
Query 53636 ACAATTACTTT 53646
|| | ||| ||
Sbjct 5155 ACCACTACCTT 5145
>seq187
Length=54303
Score = 86.0 bits (94), Expect = 7e-12
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692
||||| || || |||||||||||||| ||||| || || | || ||| || ||||||
Sbjct 43126 ACTTCATCAACAGTCCAAAATGATGCTAAGGCCTTCTTGTAAAAATCCCAAATATCATGA 43067
Query 24693 TATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729
||| ||| ||||| |||||||| | |||||||||||
Sbjct 43066 AATTTAATAGGAAATATAACAAAACGATTTGGATTTT 43030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593571366170640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |