Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9110 96.9 4e-15 seq8094 89.7 5e-13 >seq9110 Length=1366 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || || || ||||||||||| || | || || |||||| | Sbjct 223 ATGCAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAGCCTCT 282 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| | ||| ||| | | | ||||| |||||||| || |||| || Sbjct 283 GATACTATCGAGAACGTTAAAGCAAAGA-TCCAAGACAAGGAGGGCATTCCACCGGATCA 341 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||||| |||| || || |||||| |||| |||| || || || || || || Sbjct 342 GCAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAA 401 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || || || | ||||| || || || Sbjct 402 TATTCAAAAAGAATCGACGCTTCACCTGGT 431 >seq8094 Length=1710 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| | ||||| |||||||| || | || || || || | Sbjct 1168 AATGCAAATTTTCGTGAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTC 1109 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | ||||| | ||| ||| | | | || || |||||||| || | || | Sbjct 1108 GGATACCATCGAAAACGTTAAAGCAAAGA-TCCAGGATAAGGAGGGCATTCCACCAGATC 1050 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || ||| | |||| || || ||||| |||| |||| || || || ||||| | Sbjct 1049 AACAGCGATTGATCTTTGCCGGAAAACAATTGGAGGACGGTCGTACGCTGTCGGACTATA 990 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | ||||||||||| | ||||| || || || Sbjct 989 ATATCCAGAAGGAATCGACGCTTCACCTGGT 959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515088830221680