Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq9110 131 3e-25 seq8094 91.5 2e-13 seq3612 84.2 3e-11 >seq9110 Length=1366 Score = 131 bits (144), Expect = 3e-25 Identities = 171/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || |||||||||| || |||||||| ||||| | ||| | ||||| | Sbjct 223 ATGCAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAGCCTCT 282 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || || ||||| || || || ||||| || || || || ||||| ||||| Sbjct 283 GATACTATCGAGAACGTTAAAGCA-AAGATCCAAGACAAGGAGGGCATTCCACCGGATCA 341 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || ||||| |||||||| || ||||| |||| || | |||||||| Sbjct 342 GCAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAA 401 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATT 124769 ||||||||||||||| || | || ||||| | ||| | || || || |||| Sbjct 402 TATTCAAAAAGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGGCTATT 454 >seq8094 Length=1710 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || |||||||||| || |||||||| ||||| | || | ||||| Sbjct 1514 ATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCG 1455 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| ||||| |||||||| |||||||| || || || |||||||| Sbjct 1454 GATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCTCCTGATCAG 1395 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 || | || ||||||||||| Sbjct 1394 CAGCGTCTCATTTTTGCAGG 1375 Score = 87.8 bits (96), Expect = 3e-12 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || |||| || ||||| ||||| | || | || || Sbjct 1168 AATGCAAATTTTCGTGAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTC 1109 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| || || ||||| || || || || ||||| || || || ||||| |||| Sbjct 1108 GGATACCATCGAAAACGTTAAAGCA-AAGATCCAGGATAAGGAGGGCATTCCACCAGATC 1050 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| | | || ||||| ||||||||||| ||||| |||| || | || |||| Sbjct 1049 AACAGCGATTGATCTTTGCCGGAAAACAATTGGAGGACGGTCGTACGCTGTCGGACTATA 990 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATT 124769 |||| || || ||||| || | || ||||| | ||| | || || || |||| Sbjct 989 ATATCCAGAAGGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGGCTATT 936 >seq3612 Length=5795 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||||||| | || ||| | || ||||| || || || | ||| | ||| | Sbjct 1505 AATGCAAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAATCGTC 1446 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | || |||||||| ||||| || || || |||||||| || Sbjct 1445 TGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCTGACCA 1386 Query 124658 ACAAAGGCTTATTTTTGCAGGAAA 124681 ||| | |||||||||||||| || Sbjct 1385 GCAACGACTTATTTTTGCAGGTAA 1362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755264841302400