Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq9110 131 3e-25
seq8094 91.5 2e-13
seq3612 84.2 3e-11
>seq9110
Length=1366
Score = 131 bits (144), Expect = 3e-25
Identities = 171/233 (73%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || |||||||||| || |||||||| ||||| | ||| | ||||| |
Sbjct 223 ATGCAGATTTTCGTAAAGACACTTACTGGCAAAACCATAACGCTGGAGGTAGAAGCCTCT 282
Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||| || || ||||| || || || ||||| || || || || ||||| |||||
Sbjct 283 GATACTATCGAGAACGTTAAAGCA-AAGATCCAAGACAAGGAGGGCATTCCACCGGATCA 341
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| | || || ||||| |||||||| || ||||| |||| || | ||||||||
Sbjct 342 GCAACGACTAATCTTTGCCGGAAAACAGTTGGAGGACGGTCGTACGCTGTCGGATTATAA 401
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATT 124769
||||||||||||||| || | || ||||| | ||| | || || || ||||
Sbjct 402 TATTCAAAAAGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGGCTATT 454
>seq8094
Length=1710
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || |||||||||| || |||||||| ||||| | || | |||||
Sbjct 1514 ATGCAGATTTTCGTAAAGACACTGACTGGCAAAACGATAACGTTGGAAGTAGAAGCCTCG 1455
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| || ||| ||||| |||||||| |||||||| || || || ||||||||
Sbjct 1454 GATACTATCGAGAATGTAAAAGCCAAAATTCAGGATAAAGAGGGCATTCCTCCTGATCAG 1395
Query 124659 CAAAGGCTTATTTTTGCAGG 124678
|| | || |||||||||||
Sbjct 1394 CAGCGTCTCATTTTTGCAGG 1375
Score = 87.8 bits (96), Expect = 3e-12
Identities = 162/234 (69%), Gaps = 3/234 (1%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| || | || || |||| || ||||| ||||| | || | || ||
Sbjct 1168 AATGCAAATTTTCGTGAAAACTTTAACGGGTAAAACCATAACGTTGGAAGTGGAGGCTTC 1109
Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
||||| || || ||||| || || || || ||||| || || || ||||| ||||
Sbjct 1108 GGATACCATCGAAAACGTTAAAGCA-AAGATCCAGGATAAGGAGGGCATTCCACCAGATC 1050
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
|||| | | || ||||| ||||||||||| ||||| |||| || | || ||||
Sbjct 1049 AACAGCGATTGATCTTTGCCGGAAAACAATTGGAGGACGGTCGTACGCTGTCGGACTATA 990
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATT 124769
|||| || || ||||| || | || ||||| | ||| | || || || ||||
Sbjct 989 ATATCCAGAAGGAATCGACGCTTCACCTGGTTCTTCGTCTTCGCGGCGGCTATT 936
>seq3612
Length=5795
Score = 84.2 bits (92), Expect = 3e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||||||||| | || ||| | || ||||| || || || | ||| | ||| |
Sbjct 1505 AATGCAAATATTCGTGAAAACATTGACTGGCAAGACGATTACCCTTGAGGTAGAATCGTC 1446
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| ||| ||| | || |||||||| ||||| || || || |||||||| ||
Sbjct 1445 TGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAGGAGGGCATCCCACCTGACCA 1386
Query 124658 ACAAAGGCTTATTTTTGCAGGAAA 124681
||| | |||||||||||||| ||
Sbjct 1385 GCAACGACTTATTTTTGCAGGTAA 1362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755264841302400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |