Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq894 98.7 1e-15 seq3095 95.1 1e-14 seq9110 93.3 5e-14 seq3092 91.5 2e-13 >seq894 Length=21765 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| |||||| | ||||||||||| |||| Sbjct 12573 AAAAACCTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 12632 Query 60117 TCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||| Sbjct 12633 TCACCACTATACTACCGAGGAT 12654 >seq3095 Length=7004 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 890 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 949 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 950 TACTACCGAGGA 961 >seq9110 Length=1366 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||||||||| ||||| | ||| || || |||| || | ||| || || || || Sbjct 413 TCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAG 354 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || ||||| ||||| || | || | || ||||||||| ||| ||| ||| | || Sbjct 353 ATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGGATCTTTGCTTTAACGTTC 294 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || || | ||| || || | ||| ||||||||||| || || |||||||| Sbjct 293 TCGATAGTATCAGAGGCTTCTACCTCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTTACG 234 Query 43173 AAGATTTGCAT 43183 || || ||||| Sbjct 233 AAAATCTGCAT 223 >seq3092 Length=7011 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 4120 CTCCCCGACCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 4179 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 4180 TACTACCGAGGAT 4192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571672908704040