Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq9110 105 4e-18
>seq9110
Length=1366
Score = 105 bits (116), Expect = 4e-18
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|||||||| || | || |||||||| | || |||||| || || || || || |||
Sbjct 449 CCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGAC 390
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
||| ||| |||| |||||||| || || || || || || || ||||| || ||
Sbjct 389 AGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGA 330
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTA--GATCGGCTATCGAATCGGTCGATTCGA 34340
| || ||||||||| |||||| |||||| | || | || | ||| | | ||| |
Sbjct 329 ATGCCCTCCTTGTCTTGGATCTTT-GCTTTAACGTTCT-CGATAGTATCAGAGGCTTCTA 272
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| |||| ||| ||||||||||| || || || || || || ||||||||
Sbjct 271 CCTCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCAT 223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322992294402080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |