Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq9110 89.7 4e-13
seq8094 82.4 6e-11
>seq9110
Length=1366
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 18096 TATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCG 18155
|| || || || || | ||| |||| |||||| || |||||||||||||| || || ||
Sbjct 452 TAGCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCC 393
Query 18156 GCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACG 18215
| || || || || ||||| ||||| || ||| |||| |||| ||| ||||||
Sbjct 392 GACAGCGTACGACCGTCCTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGT 333
Query 18216 GGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTC 18274
|| | ||| ||||| || || | |||| || || | | | ||| ||| || ||
Sbjct 332 GGAATGCCCTCCTTGTCTTGGATCT-TTGCTTTAACGTTCTCGATAGTATCAGAGGCTTC 274
Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | || ||| ||||||| || | ||| ||||| ||||| |||||
Sbjct 273 TACCTCCAGCGTTATGGTTTTGCCAGTAAGTGTCTTTACGAAAATCTGCAT 223
>seq8094
Length=1710
Score = 82.4 bits (90), Expect = 6e-11
Identities = 159/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 18096 TATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCG 18155
|| || || || || | ||| |||| |||||| || ||||| || || || || |||||
Sbjct 938 TAGCCGCCGCGAAGACGAAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCC 997
Query 18156 GCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACG 18215
| || || || || ||||||||||| || ||| |||| | || ||||||||
Sbjct 998 GACAGCGTACGACCGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGT 1057
Query 18216 GGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTC 18274
|| | ||| |||||||| || | |||| || || | | | | || || | |||
Sbjct 1058 GGAATGCCCTCCTTATCCTGGATCT-TTGCTTTAACGTTTTCGATGGTATCCGAAGCCTC 1116
Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | || ||| |||| || || || ||||| || ||||||||||||
Sbjct 1117 CACTTCCAACGTTATGGTTTTACCCGTTAAAGTTTTCACGAAAATTTGCATT 1168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379250411449035
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |