Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq11 114 2e-20
seq2720 93.3 5e-14
>seq11
Length=130440
Score = 114 bits (126), Expect = 2e-20
Identities = 104/131 (79%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 62754 AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62813
|| ||||| || || |||| |||||||||||||| || || || | |||||||||||||
Sbjct 103280 AGGATAAAAGCATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 103221
Query 62814 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62873
|| ||| ||||| || | ||||||||||| ||| ||||||||||| | ||||||
Sbjct 103220 GATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTCTA 103161
Query 62874 ACAATTACTTT 62884
|| ||||||||
Sbjct 103160 ACCATTACTTT 103150
>seq2720
Length=8031
Score = 93.3 bits (102), Expect = 5e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 62754 AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62813
|| ||||| | || |||| |||||||||||||| || || || | |||||||||||||
Sbjct 5275 AGGATAAAAGTATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 5216
Query 62814 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62873
|| ||| | ||| || | ||||||||||| ||| ||||||||||| | |||| |
Sbjct 5215 GATCGTTCCGTTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTTA 5156
Query 62874 ACAATTACTTT 62884
|| | ||| ||
Sbjct 5155 ACCACTACCTT 5145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629658232529040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |