Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq11 87.8 2e-12 seq2720 84.2 2e-11 >seq11 Length=130440 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 37507 ATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGAT 37566 ||||| ||||||| | || |||||||| || || || || | |||| ||||||||||| Sbjct 103277 ATAAAAGCATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTAGAT 103218 Query 37567 CTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACT 37626 | || ||| ||||||||||||||| ||| || |||||||| | |||| |||| Sbjct 103217 CGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTCTAACC 103158 Query 37627 AGTATTTTCGT 37637 | || ||| || Sbjct 103157 ATTACTTTAGT 103147 >seq2720 Length=8031 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 37507 ATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGAT 37566 ||||| |||||| | || |||||||| || || || || | |||| ||||||||||| Sbjct 5272 ATAAAAGTATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTAGAT 5213 Query 37567 CTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAAC 37625 | || ||| ||||||||||||||| ||| || |||||||| | ||||||||| Sbjct 5212 CGTTCCGTTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTTAAC 5154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468406245655920