Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq11 105 9e-18 seq187 89.7 7e-13 seq2720 84.2 3e-11 >seq11 Length=130440 Score = 105 bits (116), Expect = 9e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 71509 AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTA 71568 || ||||| || || |||| |||||||| ||||| || || || | |||||||||||| Sbjct 103280 AGGATAAAAGCATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 103221 Query 71569 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 71628 || ||| ||||| || | ||||||||||| ||| ||||||||||| | |||||| Sbjct 103220 GATCGTTCCGCTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTCTA 103161 Query 71629 ACTATTACTTT 71639 || |||||||| Sbjct 103160 ACCATTACTTT 103150 >seq187 Length=54303 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 |||||| || || ||||||||||||||| ||||| || || | || ||| |||||||| Sbjct 43127 TACTTCATCAACAGTCCAAAATGATGCTAAGGCCTTCTTGTAAAAATCCCAAATATCATG 43068 Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 | ||| ||| || || |||||||| | |||||||||| Sbjct 43067 AAATTTAATAGGAAATATAACAAAACGATTTGGATTT 43031 >seq2720 Length=8031 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 71509 AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTA 71568 || ||||| | || |||| |||||||| ||||| || || || | |||||||||||| Sbjct 5275 AGGATAAAAGTATCAGCTAGGCCTTGAACACCAATGCCAATCGGACGATGTCTCTTATTA 5216 Query 71569 GAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 71628 || ||| | ||| || | ||||||||||| ||| ||||||||||| | |||| | Sbjct 5215 GATCGTTCCGTTTCCGGTACTGGATAATAATTGCGATCAATAATTTTATTCAAATTTTTA 5156 Query 71629 ACTATTACTTT 71639 || | ||| || Sbjct 5155 ACCACTACCTT 5145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670969376614680