Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq3027 91.5 1e-13
seq8094 84.2 2e-11
>seq3027
Length=7170
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 15254 GGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313
|||||||||||||| || ||| || |||||||||||| || ||||| | ||||
Sbjct 5928 GGAATTCCTTCTTTTTCTTGAATCCTGTCCTTTACAATTTCGATTGTATCAGAAGTTTCA 5869
Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| ||||| || || ||||| || ||| ||||||||||||||||||||
Sbjct 5868 ACTTCTAAAGTGATTGTTTTGCCCTTCAACGTTTTTACAAAAATTTGCAT 5819
>seq8094
Length=1710
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/158 (73%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 15207 CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTT 15266
|||| || |||||||| || || | ||||| || ||||| || |||||| || || |
Sbjct 1011 CGTCCTCCAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCT 1070
Query 15267 TGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTA 15325
| || || |||||| || || |||| |||||||| | || || || || ||
Sbjct 1071 TATCCTGGATCTTTGCT-TTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTT 1129
Query 15326 ATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||||||||| || | |||||| || |||||||||||
Sbjct 1130 ATGGTTTTACCCGTTAAAGTTTTCACGAAAATTTGCAT 1167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362089846203663
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |