Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq8094 95.1 1e-14 seq9110 84.2 2e-11 >seq8094 Length=1710 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||| || ||||| || ||||| || |||| || || |||||||| Sbjct 959 ACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGACCGTCCTCC 1018 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | ||||| || ||| | || | || ||| ||||| || | |||||| || || Sbjct 1019 AATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGG 1078 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || ||| || | ||| ||||| || |||| ||| | || ||||||||| Sbjct 1079 ATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGTTTTA 1138 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || ||||||||||| || |||||||||||| Sbjct 1139 CCCGTTAAAGTTTTCACGAAAATTTGCATT 1168 >seq9110 Length=1366 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||| || || ||||||||||| ||||||| || || |||||||| Sbjct 431 ACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCC 372 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | |||||| || ||| | || |||| ||||||||| || | |||||| ||||| Sbjct 371 AACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGG 312 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC-TCCGTTTCGACGGTAATGGTTTT 19011 || || ||| || | ||| |||||| |||| || || | || |||||||| Sbjct 311 ATCTTTGCTTTAACGTTCTCGATAGTATC-AGAGGCTTCTACCTCCAGCGTTATGGTTTT 253 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || || ||||| ||||| Sbjct 252 GCCAGTAAGTGTCTTTACGAAAATCTGCAT 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414470520096742