Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq8094 95.1 1e-14
seq9110 84.2 2e-11
>seq8094
Length=1710
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||| | ||| || ||||| || ||||| || |||| || || ||||||||
Sbjct 959 ACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGACCGTCCTCC 1018
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
| ||||| || ||| | || | || ||| ||||| || | |||||| || ||
Sbjct 1019 AATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTATCCTGG 1078
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012
|| || ||| || | ||| ||||| || |||| ||| | || |||||||||
Sbjct 1079 ATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGTTTTA 1138
Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| ||||||||||| || ||||||||||||
Sbjct 1139 CCCGTTAAAGTTTTCACGAAAATTTGCATT 1168
>seq9110
Length=1366
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||| | ||| || || ||||||||||| ||||||| || || ||||||||
Sbjct 431 ACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCC 372
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
| |||||| || ||| | || |||| ||||||||| || | |||||| |||||
Sbjct 371 AACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGG 312
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGC-TCCGTTTCGACGGTAATGGTTTT 19011
|| || ||| || | ||| |||||| |||| || || | || ||||||||
Sbjct 311 ATCTTTGCTTTAACGTTCTCGATAGTATC-AGAGGCTTCTACCTCCAGCGTTATGGTTTT 253
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| || | || || || ||||| |||||
Sbjct 252 GCCAGTAAGTGTCTTTACGAAAATCTGCAT 223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414470520096742
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |