Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq9110 93.3 3e-14 >seq9110 Length=1366 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 ||||| |||||||| ||||| ||||| |||| | | ||| ||||| || ||||| Sbjct 419 GTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTCCTCCAACTGTTTTCCG 360 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 ||| |||| |||||||| |||| || ||||| || || || ||| || ||| Sbjct 359 GCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTTGTCTTGGATCTT-TGCTTT 301 Query 33293 ACTGTT-TGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGT 33351 | ||| | || || || || || || ||||| ||||| ||||| || ||||| || Sbjct 300 AACGTTCTCGATAGTATCAGAGGCTTCTACCTCCAGCGTTATGGTTTTGCCAGTAAGTGT 241 Query 33352 TTTTACGAAAATTTGCAT 33369 ||||||||||| ||||| Sbjct 240 CTTTACGAAAATCTGCAT 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318698953880214