Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq9110 145 2e-29 seq8094 138 3e-27 seq3612 107 4e-18 seq18801 86.0 1e-11 seq11838 86.0 1e-11 seq3027 86.0 1e-11 >seq9110 Length=1366 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || |||||||| ||||||||||| || || || || | |||||| Sbjct 435 AAGAACCAGGTGAAGCGTCGATTCTTTTTGAATATTATAATCCGACAGCGTACGACCGTC 376 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | |||||||| ||||| ||||| | || ||||| || || || || || || || Sbjct 375 CTCCAACTGTTTTCCGGCAAAGATTAGTCGTTGCTGATCCGGTGGAATGCCCTCCTTGTC 316 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||||||||| || || || | ||||| | ||||||||| || || || || Sbjct 315 TTGGATCTTTGCTTTAACGTTCTCGATAGTATCAGAGGCTTCTACCTCCAGCGTTATGGT 256 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||||||||| ||||| || |||||||| Sbjct 255 TTTGCCAGTAAGTGTCTTTACGAAAATCTGCAT 223 >seq8094 Length=1710 Score = 138 bits (152), Expect = 3e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || ||||| ||||| ||||||||||| || || || | |||||| Sbjct 955 AAGAACCAGGTGAAGCGTCGATTCCTTCTGGATATTATAGTCCGACAGCGTACGACCGTC 1014 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | ||||||||| ||||| || | | ||||||||| || || || || || ||||| Sbjct 1015 CTCCAATTGTTTTCCGGCAAAGATCAATCGCTGTTGATCTGGTGGAATGCCCTCCTTATC 1074 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||||||||| || ||||| | |||||| || || || || | || || || Sbjct 1075 CTGGATCTTTGCTTTAACGTTTTCGATGGTATCCGAAGCCTCCACTTCCAACGTTATGGT 1134 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || | ||||| || || || |||||| Sbjct 1135 TTTACCCGTTAAAGTTTTCACGAAAATTTGCATT 1168 Score = 116 bits (128), Expect = 9e-21 Identities = 112/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || | ||| ||||||||||| || || |||||||||||||| || ||| Sbjct 1375 CCTGCAAAAATGAGACGCTGCTGATCAGGAGGAATGCCCTCTTTATCCTGAATTTTGGCT 1434 Query 104480 TTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 |||||||| || | ||||| | ||| |||||| || | || || || || ||||| || Sbjct 1435 TTTACATTCTCGATAGTATC-CGAGGCTTCTACTTCCAACGTTATCGTTTTGCCAGTCAG 1493 Query 104539 TGTTTTTACAAATATCTGCAT 104559 ||| ||||| || |||||||| Sbjct 1494 TGTCTTTACGAAAATCTGCAT 1514 >seq3612 Length=5795 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || |||||||| || | || || ||||| || || || || ||||||||||| || Sbjct 1362 TTACCTGCAAAAATAAGTCGTTGCTGGTCAGGTGGGATGCCCTCCTTATCCTGAATTTTA 1421 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | ||||| | ||||||||| || ||||| ||||| ||||| Sbjct 1422 GCCTTCACATTCTCAATAGTATCAGACGATTCTACCTCAAGGGTAATCGTCTTGCCAGTC 1481 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | |||||| || ||||| ||||||||| Sbjct 1482 AATGTTTTCACGAATATTTGCATTTTG 1508 >seq18801 Length=524 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||||||||| || || ||||| ||||| ||||| || || ||||| ||||| | | ||| Sbjct 291 CTGTTGATCTGGTGGAATTCCCTCTTTGTCCTGCATTTTCGCTTTAACATTCTTGATGGT 350 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| | ||| | || | ||| || || ||||||||||| ||||||||||| || || Sbjct 351 ATCAGATGCTTCCATTTCCAATGTGATCGTTTTACCAGTAAGAGTTTTTACAAAAATTTG 410 >seq11838 Length=813 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| | | ||| ||||||||||| || || ||||||| |||||| || ||| Sbjct 562 CCTGCAAAAATAATACGCTGCTGATCAGGAGGAATGCCCTCTTTATTCTGAATTTTGGCT 621 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 | |||||| || | | ||| |||||||| ||| || || || ||||||||| Sbjct 622 TCTACATTCTCGATAGCATCCGGGACTTCTACCTTTAGCGTTGCGGTTTTCCCAGTAAGT 681 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| | || ||||| || Sbjct 682 GTTTTATCGAAAATCTGTAT 701 >seq3027 Length=7170 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 104415 GTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCT 104474 |||| ||| ||||||| || | ||| ||||| | || ||||||||||| || |||||| Sbjct 5963 GTTTACCATCAAAAATAAGACACTGCTGATCTAGCGGAATTCCTTCTTTTTCTTGAATCC 5904 Query 104475 TTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAG 104534 | | |||||| |||| | ||||| || ||| || |||| || || || || || Sbjct 5903 TGTCCTTTACAATTTCGATTGTATCAGAAGTTTCAACTTCTAAAGTGATTGTTTTGCCCT 5844 Query 104535 TAAGTGTTTTTACAAATATCTGCAT 104559 | | ||||||||||| || ||||| Sbjct 5843 TCAACGTTTTTACAAAAATTTGCAT 5819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151099769353044