Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04]
20,243 sequences; 91,660,559 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq4794 91.5 1e-13
seq11633 89.7 5e-13
seq4359 89.7 5e-13
seq15940 86.0 6e-12
seq15764 84.2 2e-11
seq8089 84.2 2e-11
seq16003 82.4 7e-11
>seq4794
Length=3943
Score = 91.5 bits (100), Expect = 1e-13
Identities = 85/107 (79%), Gaps = 6/107 (6%)
Strand=Plus/Plus
Query 113275 GTCGTGCCCGACTCTGTGCGAC---AAAGACAGAAGCTCACCAAACTCTTCGTCTCTG-- 113329
|||||| |||||||||||| || | |||| | ||| | ||| || | |||| |||
Sbjct 3187 GTCGTGGCCGACTCTGTGCAACCCCATAGACGGCAGCCCCCCAGACCCCCCGTCCCTGGG 3246
Query 113330 -TTCTCCAAGCAAGAACACTGGAGTGATTTGCCATTTCCGTCTCCAA 113375
||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 3247 ATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAA 3293
>seq11633
Length=837
Score = 89.7 bits (98), Expect = 5e-13
Identities = 86/108 (80%), Gaps = 7/108 (6%)
Strand=Plus/Minus
Query 113275 GTCGTGCCCGACTCTGTGCGAC---AAAGACAGAAGCTCACCAAACTCTTC-GTCTCTG- 113329
|||||| |||| |||||||||| | |||| | || ||||| |||| | ||| |||
Sbjct 115 GTCGTGTCCGATTCTGTGCGACCCCATAGACGGTGGCCCACCAGGCTCTCCCGTCCCTGG 56
Query 113330 --TTCTCCAAGCAAGAACACTGGAGTGATTTGCCATTTCCGTCTCCAA 113375
||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 55 GATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAA 8
>seq4359
Length=4529
Score = 89.7 bits (98), Expect = 5e-13
Identities = 86/108 (80%), Gaps = 7/108 (6%)
Strand=Plus/Minus
Query 113275 GTCGTGCCCGACTCTGTGCGAC---AAAGACAGAAGCTCACCAAACTCTTC-GTCTCTG- 113329
|||||| ||||||||||||||| | ||| | ||| ||||| ||| || ||| |||
Sbjct 4444 GTCGTGTCCGACTCTGTGCGACGCTATAGATGGCAGCCCACCAGGCTCCTCTGTCCCTGG 4385
Query 113330 --TTCTCCAAGCAAGAACACTGGAGTGATTTGCCATTTCCGTCTCCAA 113375
||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 4384 GATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTGCTCCAA 4337
>seq15940
Length=589
Score = 86.0 bits (94), Expect = 6e-12
Identities = 84/106 (79%), Gaps = 7/106 (7%)
Strand=Plus/Plus
Query 113275 GTCGTGCCCGACTCTGTGCGAC---AAAGACAGAAGCTCACCAAACTCTTCG-TCTCTG- 113329
|||||| ||||||||||| ||| |||||| | ||| ||||| ||| | || |||
Sbjct 484 GTCGTGTCCGACTCTGTGTGACCCCAAAGACGGCAGCCCACCAGGCTCCCCCATCCCTGG 543
Query 113330 --TTCTCCAAGCAAGAACACTGGAGTGATTTGCCATTTCCGTCTCC 113373
||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 544 GATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCC 589
>seq15764
Length=594
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/108 (79%), Gaps = 7/108 (6%)
Strand=Plus/Plus
Query 113275 GTCGTGCCCGACTCTGTGCGAC---AAAGACAGAAGCTCACCAAACT-CTTCGTCTCTG- 113329
||||||||| |||||||| ||| | |||||| |||| |||| || | | || |||
Sbjct 470 GTCGTGCCCAACTCTGTGTGACCCCATAGACAGTAGCTGACCAGGCTTCCCCATCCCTGG 529
Query 113330 --TTCTCCAAGCAAGAACACTGGAGTGATTTGCCATTTCCGTCTCCAA 113375
||||||| |||||||||||||||| ||||||||||| |||||||
Sbjct 530 GATTCTCCAGGCAAGAACACTGGAGTAGGTTGCCATTTCCTTCTCCAA 577
>seq8089
Length=1712
Score = 84.2 bits (92), Expect = 2e-11
Identities = 77/96 (80%), Gaps = 6/96 (6%)
Strand=Plus/Minus
Query 113275 GTCGTGCCCGACTCTGTGCGAC---AAAGACAGAAGCTCACCAAACTCTTCGTCTCTG-- 113329
|||||| ||||||||||||||| | |||| ||||| ||||| ||| | || |||
Sbjct 888 GTCGTGTCCGACTCTGTGCGACCCCATAGACGGAAGCCCACCAGGCTCCCCATCCCTGGG 829
Query 113330 -TTCTCCAAGCAAGAACACTGGAGTGATTTGCCATT 113364
||||||| ||||||||||||||||| ||||||||
Sbjct 828 ATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATT 793
>seq16003
Length=587
Score = 82.4 bits (90), Expect = 7e-11
Identities = 85/109 (78%), Gaps = 8/109 (7%)
Strand=Plus/Minus
Query 113275 GTCGTGCCCGACTCTGTGCGAC---AAAGACAGAAGCTCACCAAACTCTTCGTCTC--TG 113329
|||||| | ||||||||||||| | |||| | ||||||||| ||| | || | ||
Sbjct 127 GTCGTGTCTGACTCTGTGCGACCCCATAGACGGCAGCTCACCAGGCTCCCCATCCCCCTG 68
Query 113330 ---TTCTCCAAGCAAGAACACTGGAGTGATTTGCCATTTCCGTCTCCAA 113375
||||||| ||||||||| ||||||| ||||||||||| |||||||
Sbjct 67 GGATTCTCCAGGCAAGAACAGTGGAGTGGGTTGCCATTTCCTTCTCCAA 19
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447637102358160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |