Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq4794 91.5 1e-13 seq11633 89.7 5e-13 seq4359 89.7 5e-13 seq15940 86.0 6e-12 seq15764 84.2 2e-11 seq8089 84.2 2e-11 seq16003 82.4 7e-11 >seq4794 Length=3943 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/107 (79%), Gaps = 6/107 (6%) Strand=Plus/Plus Query 113275 GTCGTGCCCGACTCTGTGCGAC---AAAGACAGAAGCTCACCAAACTCTTCGTCTCTG-- 113329 |||||| |||||||||||| || | |||| | ||| | ||| || | |||| ||| Sbjct 3187 GTCGTGGCCGACTCTGTGCAACCCCATAGACGGCAGCCCCCCAGACCCCCCGTCCCTGGG 3246 Query 113330 -TTCTCCAAGCAAGAACACTGGAGTGATTTGCCATTTCCGTCTCCAA 113375 ||||||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 3247 ATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAA 3293 >seq11633 Length=837 Score = 89.7 bits (98), Expect = 5e-13 Identities = 86/108 (80%), Gaps = 7/108 (6%) Strand=Plus/Minus Query 113275 GTCGTGCCCGACTCTGTGCGAC---AAAGACAGAAGCTCACCAAACTCTTC-GTCTCTG- 113329 |||||| |||| |||||||||| | |||| | || ||||| |||| | ||| ||| Sbjct 115 GTCGTGTCCGATTCTGTGCGACCCCATAGACGGTGGCCCACCAGGCTCTCCCGTCCCTGG 56 Query 113330 --TTCTCCAAGCAAGAACACTGGAGTGATTTGCCATTTCCGTCTCCAA 113375 ||||||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 55 GATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAA 8 >seq4359 Length=4529 Score = 89.7 bits (98), Expect = 5e-13 Identities = 86/108 (80%), Gaps = 7/108 (6%) Strand=Plus/Minus Query 113275 GTCGTGCCCGACTCTGTGCGAC---AAAGACAGAAGCTCACCAAACTCTTC-GTCTCTG- 113329 |||||| ||||||||||||||| | ||| | ||| ||||| ||| || ||| ||| Sbjct 4444 GTCGTGTCCGACTCTGTGCGACGCTATAGATGGCAGCCCACCAGGCTCCTCTGTCCCTGG 4385 Query 113330 --TTCTCCAAGCAAGAACACTGGAGTGATTTGCCATTTCCGTCTCCAA 113375 ||||||| ||||||||||||||||| ||||||||||| |||||| Sbjct 4384 GATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTGCTCCAA 4337 >seq15940 Length=589 Score = 86.0 bits (94), Expect = 6e-12 Identities = 84/106 (79%), Gaps = 7/106 (7%) Strand=Plus/Plus Query 113275 GTCGTGCCCGACTCTGTGCGAC---AAAGACAGAAGCTCACCAAACTCTTCG-TCTCTG- 113329 |||||| ||||||||||| ||| |||||| | ||| ||||| ||| | || ||| Sbjct 484 GTCGTGTCCGACTCTGTGTGACCCCAAAGACGGCAGCCCACCAGGCTCCCCCATCCCTGG 543 Query 113330 --TTCTCCAAGCAAGAACACTGGAGTGATTTGCCATTTCCGTCTCC 113373 ||||||| ||||||||||||||||| ||||||||||| ||||| Sbjct 544 GATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCC 589 >seq15764 Length=594 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/108 (79%), Gaps = 7/108 (6%) Strand=Plus/Plus Query 113275 GTCGTGCCCGACTCTGTGCGAC---AAAGACAGAAGCTCACCAAACT-CTTCGTCTCTG- 113329 ||||||||| |||||||| ||| | |||||| |||| |||| || | | || ||| Sbjct 470 GTCGTGCCCAACTCTGTGTGACCCCATAGACAGTAGCTGACCAGGCTTCCCCATCCCTGG 529 Query 113330 --TTCTCCAAGCAAGAACACTGGAGTGATTTGCCATTTCCGTCTCCAA 113375 ||||||| |||||||||||||||| ||||||||||| ||||||| Sbjct 530 GATTCTCCAGGCAAGAACACTGGAGTAGGTTGCCATTTCCTTCTCCAA 577 >seq8089 Length=1712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 77/96 (80%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 113275 GTCGTGCCCGACTCTGTGCGAC---AAAGACAGAAGCTCACCAAACTCTTCGTCTCTG-- 113329 |||||| ||||||||||||||| | |||| ||||| ||||| ||| | || ||| Sbjct 888 GTCGTGTCCGACTCTGTGCGACCCCATAGACGGAAGCCCACCAGGCTCCCCATCCCTGGG 829 Query 113330 -TTCTCCAAGCAAGAACACTGGAGTGATTTGCCATT 113364 ||||||| ||||||||||||||||| |||||||| Sbjct 828 ATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATT 793 >seq16003 Length=587 Score = 82.4 bits (90), Expect = 7e-11 Identities = 85/109 (78%), Gaps = 8/109 (7%) Strand=Plus/Minus Query 113275 GTCGTGCCCGACTCTGTGCGAC---AAAGACAGAAGCTCACCAAACTCTTCGTCTC--TG 113329 |||||| | ||||||||||||| | |||| | ||||||||| ||| | || | || Sbjct 127 GTCGTGTCTGACTCTGTGCGACCCCATAGACGGCAGCTCACCAGGCTCCCCATCCCCCTG 68 Query 113330 ---TTCTCCAAGCAAGAACACTGGAGTGATTTGCCATTTCCGTCTCCAA 113375 ||||||| ||||||||| ||||||| ||||||||||| ||||||| Sbjct 67 GGATTCTCCAGGCAAGAACAGTGGAGTGGGTTGCCATTTCCTTCTCCAA 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447637102358160